Gene detail

Detailed information of amic_s0243.g12.t1 in Acropora microphthalma

Genomic Location: sc0000243_pilon:154326...164266
NR annotation: XP_015775475.1, PREDICTED: serine palmitoyltransferase 1-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MHG1	Serine palmitoyltransferase 1 OS=Bos taurus OX=9913 GN=SPTLC1 PE=2 SV=1
O54695	Serine palmitoyltransferase 1 OS=Cricetulus griseus OX=10029 GN=SPTLC1 PE=1 SV=1
O35704	Serine palmitoyltransferase 1 OS=Mus musculus OX=10090 GN=Sptlc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005076 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050087 all species →	Family	8-amino-7-oxononanoate synthase class-II	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693 all species →	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004758 all species →	Molecular Function	serine C-palmitoyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0046512 all species →	Biological Process	sphingosine biosynthetic process	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00654	SPT; serine palmitoyltransferase	EC:2.3.1.50	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.