Gene detail

Detailed information of amic_s0246.g3.t1 in Acropora microphthalma

Genomic Location: sc0000246_pilon:29806...41365
NR annotation: XP_029191837.2, uncharacterized exonuclease C637.09-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0246.g3.t1

CTCTAATATCAACGCGTCCAAGATGGAGGACGTTTCTGAAATTTCAAGAAATCCAAGAAAGCGCAAATCTTCAAGAGAAGAAAGCAATGAAAGACCTTCACCAAAGAGTGAGGCTCGAAGACAAAGAGCTAAAAGAGTAAGGACACGATCAAAACGAAAGAAGGCAAAAGTAAGCAGAAAGGATGAGAGGTGTCATTTGGCACAGCATAGACTCATCCCTTCTCCAAGCCATTTATTTCGCATCTGTGGTGCATTGAAACCTCTAAAGATCTCTGATATTCAAGACCTGATTTTGTTTGCTGCACTTCATGAAAAGGAACGTCACCTCACACTTCCAAAATGGTGTGACCAAACTGAAAAGAACAGTATCCAAAAGGTTGTTATTGTCCTTGTGAGTGGAATAGGCGCTGCTGAATATGCCAAAACTCAAGACAGTTTTACCCAGTGCAATGCTCTTTTTGATCATTGCGTGGAAACTAACTCCCCAGGGACTGATTTCTGTGTTAAGCTGCCACATGAGAGGTTACTGACTGTCAATATTCCAAAAAAGGAGTTGGAGGATGCAATAAAGAAACAAGCACTTGCCCCACGGAATGGTAATAAAGTGTTTCGAAGAGAAGATTACATTCTAAGTATGGATCAAATGATGGAGAATGATTATCCTTTACCACCAGAACCATCCTCAGATCAAGATAGCAAGATCTTTGAAGATGATGGGTACCTCTCAACAAAATTCCACAATAGATTGATGACATTAACTGAGCCTCCAATGTATGCAATTGATTGTGAGATGTGTGAGACAGCAGAGGGGATGGAACTGACAAGAATCTCAGTGGTTGATGAATCCTTTAACGTTCTCTATGACACACTTGTTAAACCATCAAACCAAATAATCGACTACAAAACAAAATATAGTGGCATCACAGAGGATATGCTCAAGAGTGTGACCACCACTTTAGCTGATGTTCAGAAGCGGCTAATCGACCTTTTCCCCTCGGATGCTATTCTCCTGGGGCATTCCTTTGAAAATGATCTTCGCGCTCTCAAGCTGTACCACCAAAGAGTTATTGACACGTCTGTCATATATCCCTCGAACACAAGTAGTACGTTATTCAAAGCCTCTCTACGCAGCCTTGCCCACAAATATTTAGACAAAGGTATCCAAAATGGAAAAAATGGTCATTGCTCAGTCGAAGACGCAAGTGCTTGCATGGAGTTAGTTCAACTCAAGATTGAAAACGGTCCAGACTTTGGGGCGCCTCCAGTCGAAAAGGAAGGGTTGTTCGAGAGGACTTCGCGCAATGGGAAAATAGTTGCCATGCTAGATTATTCAGGAATTCTTCGAAAATTTTGCACTGGAGCGACGCACACCGTCAGCTGTTCTTCGGATGAAGAGATTGTCTCCAACGCTGTGCAGTTAATGCAAGGATCAGAAATACTCTGGGCTCACTTACATGAAGCAGAGATGTTTTTGAAAGAGAACGAGTCGACAGTGGATAAAGAAAAGGAGAAAAGATGGAAGGATGTTCTTCAATCTGTGGACAACCGTATCAAAGAAATACACGATGCCGTACCAAGCCAAAGTCTGTTGCTGGTGTTGTTCGGCTGCGGTGATTTGTCTCCAGTGAGAAGACTTCAAAGACAGAGGGAAGGCAACCGAACCGAGCTAAAAGAAGCTGTAAAGACTGCAAAGAAGGGCGTGTGCTTTATAAAAATGACACCAGAAGAAATCACCGTTGGGAAAGAAATGACAACTTTGGGGCAAGATTCCGCCAATAAAATAATATTATGAGGAAGGTGTTACGTAACTTCTTTATTTTTATGTTTTACATCATTTCCACGCCAGGACATCGACATGAGGTCGTTTTGAAAGACCTTTTTCCAAGAATCTTAAGCTCACTATCACGTGATGTAGCCATTTCCTCAGAAATGAATAATTTGTGTGGGCGAGAATTTTTGTGGACACCGAAAAAAAAGGACTGTATCGTAATTATGACAAAGAACATTGGTTTAAGTTTTTCACAAAATTTCAATTTTATTTCCGGAACAGATAGTTCTCAGTTTAGCCGACTGGCTTGTTGAAAGCGTTTGAAAGACGTGAATAATTTTGTTTCAAACAAGGATTTAATTCAGTTCAAGTTAATTGGTTTAACTATTTACTAATTTGTAATGTGTGTTCGTGCGCTGACGGAGCATTTGCATTAGGCACATTTGTGACCAGGATTTCATTTTCGACAAATTAAGTCCTTTCTGGTGACTTAATGTCGAGCCCATCCTCCACCGTCTGACAGACGGAGTGAGAGTCGACTCTGCCGGGTGTCACGGGATCGTATTTGCGTAAACCTGAACAGAGCACCGATGTCAGAAATGCCATTTCTGTTTTGCGTTACAAGCTCTATACAGCTTGCGAATTTTTTTTGCCAGAAAGAATAAGCTTTGATGACGTACCAACGTGAAGCGAAGAGCTCGTGAAAATTCTTGAGTGCGGTCAGCCATTAATCACACGGCACAAAATATAAGCAATCTTGTTTTGTTTGATTGGTTCGTTGAAGATTTCTAGATGTGTAGAAGTACATGCATTCGCCTGAGACAATTTATATTTAATCTAATTCAATTCTTCACGATGATGAGGAACTTTATGATATTCCTGACATAGCAATCCTCTCAGTTTGGAGAAAGCTTCTGGTCTTCTGCTGTTCGAGACTTAAAATGAAGAATTTGCTGGCGAGAAAGTGTCCAACTGTTTATATATTCTTTGAATGAAGGAGCATTGTTCTGTCGAACTACATCGAGCACCGTCAGAAAACAGCAAATTGATTTGCCTTATACTATGATGGGTTGGTGCATTTTATTATTGTCATTTTATATAACATGTTGTTTTGTTAGGAGTCGTAGTAGGCGCTTTTGTTTTTCGTTGAGGCAAAATCTGTAATGACACATCTTGTGTCTGAATTTCAAATGAACGTTTCGAGGATATTTTTGATCTTTCATCTCGACTGTTACTTATTTCTTACTTCCCAATATCGTTTATGTCAGCCTAAGAAAAACCAGAAGAGAGAACTGAATGGTAGCGTATCGCTCAATTTGAATTTTTTTGTCGATGTTTGCGCTCGCAAATTCCGGTAGATATTTACTACTGTGCTTGTCGTGAATTAAATATCGCCGAAAATTCCACCCAAATCACGAATCAATGTAAAAATAGCAAATGAGATGTAAAATTTAAAAATAAATTTTCACGTTTCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94443	Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC637.09 PE=3 SV=2
Q8L7M4	Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2
P53331	RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RNH70 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004048 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR034922 all species →	Domain	RNA exonuclease 1-like, exonuclease domain	Interproscan
IPR047021 all species →	Family	RNA exonuclease REXO1/REXO3/REXO4-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12801 all species →	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004527 all species →	Molecular Function	exonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.