Detailed information of amic_s0248.g2.t2 in Acropora microphthalma

Genomic Location: sc0000248_pilon:13306...59855
NR annotation: XP_029198248.2, serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like isoform X3 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9R244Short transient receptor potential channel 2 OS=Mus musculus OX=10090 GN=Trpc2 PE=2 SV=2
Q9R283Short transient receptor potential channel 2 OS=Rattus norvegicus OX=10116 GN=Trpc2 PE=2 SV=2
Q9UL62Short transient receptor potential channel 5 OS=Homo sapiens OX=9606 GN=TRPC5 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001212 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13637
all species →		Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00520
all species →		Ion_transIon transport proteinFamilyInterproscan
PF00023
all species →		AnkAnkyrin repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR050889
all species →		FamilyDendritic Spine Regulation and ScaffoldInterproscan
IPR005821
all species →		DomainIon transport domainInterproscan
IPR002153
all species →		FamilyTransient receptor potential channel, canonicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24166
all species →		ROLLING PEBBLES, ISOFORM BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005216
all species →		Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811
all species →		Biological Processmonoatomic ion transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0005262
all species →		Molecular Functioncalcium channel activityInterproscan
GO:0070588
all species →		Biological Processcalcium ion transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04984TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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