Gene detail

Detailed information of amic_s0248.g26.t2 in Acropora microphthalma

Genomic Location: sc0000248_pilon:265021...276965
NR annotation: XP_015762099.1, PREDICTED: hemicentin-2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0248.g26.t2

GTTTCAATAATCTATATACGCTATTTCACAAATCTTCCCTCTGCGCTCTGCGCGTCACGCTCTCAGTGTCACCGTTCCTCCTCTTCCGTTTTCGACCATTGCATTGTCTTCTGGTCTTTGCCCAGTTCCGGTTACGTCCAGTGTTGTTCAACTTAAATGATGTCTTCCGGTTTCTCAAAAATCGTTGGCTGACCAAGCGTTCCACTGATAATGTTGTCGTCAATCATTTTTAGGTGGCACTTTGCATCATGCGACCAGCTGGTCGTCACAAGAAAAGCAACAAACGGCTCCCTATAAGGGTATCAATCCACGAGTCAGAGTTCGGCACATGACTTTCACGCAAACTACTGGCGGCTACTGCACTGTTTTCGTAGAAGGTCAAGCATATGATGAAAATGCTTTCTGGCGAAGACGTTCTTCAGAGGAGAAGTCTTCTTTCTGTTGTCCTCTGCCCAGTGATGAGTTTAGTATTGATGGCTCATGTTGCGACAACCGTTCGTATAACCAGTCCCACAGCAACACAGCTCGTCTACAAAAGCAAGAACCAATCAGTGCTGTTTAATTGCACCATTTCTGCTTCAGTGTCAGATATGCATATTAACAAGACTTTCCAATGGCTGAGAAACGATGCTGTAGTTTCGCCAGCGGAAAGAGAGGATACATTGCAGTGGTCAAGTTTTGAGCTGAAAAATCTCAGCGACAAAGATGAGGGAAAATACATTTGCATCTATGGCCAAAACCAGGATTCCGTGACGTTTTACTTTGCTATTAAACCGAAGGCCCGTAATGTTGGACGTCATAGTCCAATATTGGCCACGACAGATGATCGCGTTGCTTTACGATGCGAGGCAGAAGGATGGCCGAGACCACACATCTATTGGTTGAAGGATAACAAAAATATTTCCTTGTATGAAAAGGAAGGGTATTACATAGAGAACATACCAACTAAAGGAAGCAAAGTAAAGTCTATCGCCTCTGAATTAACCATTGTTGCCGCGCAACCGGACAACAGCGGAGAATTCACTTGTGTTGCTGTCAGTGAAATTGGGGTGTCCAAGTACAACATTACAGTTGTTGTGTCAGATCGTCCGAGCCCGACCTATAAACCGTCAATGAGTGCGCACGAGCCAAAAATCACCACCGACGTCGGCAAAGACGCCTTACTGTCGTGTACTGGGGAACAAGTTATGGAGTACACCAGGGCTACTCGCTTGTATTGGATGTTGAATGGAACAACGCTGGATACTTCAGCTGCTCACTACAATGCAACTAACACGTTCTATCATCAAGATGATGGATTGACGCCGAGTGTGGAGATGCGGCTAATGATATTTGACGTTCGTTGGCCCGATGCTGGAGTTTACATTTGTGGCGTAGATTCAACTCTAGGCCAGGCAAATGACAAAATAACACTCACAGTCAAAGACAAAGAAAGGATTGGAATCTGGATCATTCTCTGTGTTTCGGTCGCCGTCTCTGTTGTTGTTTTGATTGTAGCTTTGTATTGTTACCTTATCTCGAAGCACAGAAGGCGGCAGAGGAAAATGGCTATGCTGGCTGAAAAATGTGAGTAAGATACCCGAGATGGATCTGGTGAACATTTTCATCACGATGTATTTGTGTCCTACAGTTCCAAAGACTATGACTGGATTCAAGACAATTTACAACCAGTTTTCGATCAAAACAACATTAACTATATCATTCATTCACGCGACTTTATCCCCGGTAAAGCGTTTTTTGATAACATGGCGGACAGCGTGTACAGTAGTCGCAAAGTGATTCTTGTCATGTCGAAAAACTATCTGGCTAGCGGTTTTTGCAAAGATGAGATGCACATGGCGCTGGTTAGAGCTGCGCGGAACGACGAGGCTCATTCGTTGATTGTTGTGAAAATAGATGATGTCAAACCACAAAACATACCAAAAAGCCTTCGACATAAAACATTCATTGACTACGCCAGCCGAGAAGAATCGACAACATGGAAGACCAGAATTGTGGAATTTGTTTTGTCTGGAAATAGATCGCTGAGTGTTTCGGCAGTTGCAGGCGAAGGGGAGACATCGGATACCATTTCACTCTTTCTAAGCAAAATCAGAATGAAACGCAAGAAAAAGGAGGATGTTTGGAGAGAGTTGCCGTATCAATCTTGTTAACCAAAGCCTGTTGTTAACTTAAATGTCAACCGTTCACAGTCCTTCGTTTTTTCTTCATTTCTTTGAAGTAATGTTTTCATTTCCCGAGTAGCGGCAGATTGTCGAACTTCAGACGATTGCAGCTTCGGGTAGCTTAAAACTGGACGATTTAGCAAGAGAACGGTTAGTTGACGACTGCGTGCGCAGCAAGACTATCCTAACCACTAGTCTAGTCTATTCCGCGCGTAGTACAGTTCCCGATCTTTTCAGTAAAACAAGACGCGCGATGACGTTCAGGTCTGCTATTTTTTTACCTCACGACTTTTCTTGTACCTGTCTAACAAAAAGATGATTTCGGTGAAGGAATTGAACACTGTGTTTCAGTTTCTTAGAGAACTGGCCTCTGTATGACCGAGGCATCAAGAGTACACTAGGTGAGAGTGTTCTCGATCCTGCACGGTCACAATTGGGTGTATATTTAGATACACTTAACGCACGAAAACAAACAAGGGCCATCACCTTAAGGGTAACGTGTACGTTCAGGGGTTAAATTTCTCAATTTTTATTTTTTTCCATGAAAATAATGTTTTTGCTGTAACCATCCGTTCGACTACAGACACTCCTGAAGGTACACGGTAACCTTAACCAACTAGAAGAGACCATGTCACACGTGATTCTGGCATCCTTCTTTATTTCAGTGACTACTTCAGCAGTCGAGTAAGATTAAATTTGGTTAATATTTAACGATAAAAATAAGCGAAAGATGTTTTACACAACTTTTCGATGACTCTATGTCATCTTTTTCAAGCGAAAAGAGAAAACTGATTACGTAATATATATCGTACGAGGTGATAAAACATAAAGTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
P35969	Vascular endothelial growth factor receptor 1 OS=Mus musculus OX=10090 GN=Flt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075 all species →	BASIGIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0070593 all species →	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632 all species →	Molecular Function	cell-cell adhesion mediator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0248.g26.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.