Detailed information of amic_s0252.g4.t1 in Acropora microphthalma

Genomic Location: sc0000252_pilon:153513...154365
NR annotation: XP_013880698.1, PREDICTED: pogo transposable element with KRAB domain [Austrofundulus limnaeus]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000155 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03221
all species →		HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006600
all species →		DomainHTH CenpB-type DNA-binding domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR050863
all species →		FamilyCentromere and Transposable Element-Derived ProteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19303
all species →		TRANSPOSONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0252.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP