Gene detail

Detailed information of amic_s0256.g3.t1 in Acropora microphthalma

Genomic Location: sc0000256_pilon:115427...126045
NR annotation: XP_015753381.1, PREDICTED: uncharacterized protein LOC107333134 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0256.g3.t1

ATTAATATAAACTTCTGAACAATGGCAATACTAGTACAAGTTGAAGTTCCATTCCTTTATGTGATTGTCCATAATGCCACCTTGTTAGCTGCACATGGTGCATCTGTTACACTGAACTGCATTACCAAGTCAAGCAAACAACGGCCTCATGCTGTAGTAAAGGAATGGAGGAAAGATGGAGTTCAATTGGCTGATGAGTCAAGTTCATCGCTAACAATAACTTACAGCAATGCAAGTGACACCAACAGCAAATATCATTGTGCACCTTTGAATTCATCAAGCCGTGATGTCCAATGCACTGCAGTCTACCAATGCTCAGCTTCACTTCCTACAGTTGCTGGTTTGCCTGAAATTGAAAGTCAAGGAAATTCTACAGTTACTGTCATATTAAAGAAGCCAGGACAGTTAGTTGGTGTTTCTACAAGTAACGTGACAGCAAGAGCAGCGTTAGTGACATGGACGAATTACTCCCCTGGAGATGATGAAGCCTCAATCATCAGCATTACCGTGCGGTATCAAAGCAGCACCTCTCCTTATCAATCGGTCATTCTACAAGGAAGTTCATCAAGTCAAGAGTTAACAGATCTCAAACCTTTTTCAAAGTACAATGTCACAGTCATGGCATCAAGTGTCTGGGGTGATGGGATATGGAGTAATGCTCCAAGTTGTTCTCCTTCCAACATCGCTTCACAGTCATTGAACAAGACCAGTTATAAAATAAGCTGGGATCCTTTGACAAGAGAAAAGAGCAATGGTGTAGTGTTAGCCTATGAAGTGAAAATACTGTATATGAGGGTGTACCACATAGGATACCCATGTTCATCTGCTCCACGCTATCAAAACACAACAGACACGATGGTCACACTCCAAGGGTTGACATCATGTTCTACTTACCATGTCCTTCTGCGTGCATTTACTTCAGCTGGTGCGGGACCATTCAGTCCTACATTAGAAATTTTCACTACTGCCCCTGCTCTACCCCGTTACGTCACGGCTGGTACTCCAAGTAAAAGAAGCCTTACATTATCTTGGAAAAAGCCTCTGCGCTACGGAGACGATGTACAGATGTACACGGTTATCTATGAGGGTACAAAGAGTTATTATCCTGAGTTCAAACATACAAATTCAGTGCAAACCGTGACATTGAGTCAGGAAATTACAGATCTCTATCCTGACACAAACTACAACTTTGTTGTGGCTGCCACGACACACTGTGGAGAGGTTTATAACAGCTCTATGGTAACCATTCGGACGGTTATAGATGCTCCACCTGCACCAGGAAACCCAGGGAGACCTCAACAGATTGAAACGGAAGGGACATCAGTAAATCTGACGATTTGGCCTGCAGCAGAAGACAATGGTTCCCTCAGCTATTACCAAATTTTGGTGCATAGAATCCAGGATTGGACTGACACAGTCTCTGATTGGAATGATTTTGGATCTAATTTCTACATCTGTGCTCATATTCCTGCAGGGGATGTAAAAACCAAAAATATATTTTTACTCGGTGATGGAAAAAATAAAGGTGGTTACAATAACAAAGAGTTGTCGAGCGACCAGAAGTACAAGATTTATTCCAGGGCACTAACTCAGGTTACGTCCAAGAAACGTTCCACTGGTGAGAGATTTTTGATTGGCCAAGCGCAACTCTTAGCCCAGATTGAGGTAGAAGCAGGCACAACCGAGAAAAGAAACATGAAAATTTCGATGTTACTTCAGGAGGTAGACGGAAAAGGAGTGAGCATGGAAAGTTATGTGTTCCTTTTCATGCAGAACAGAAAAAAAAAAACAAGGAATTTTTCTTGTTCATTTTGACTTAGCAACATATGTATGTTCATGATTCCAGATTGGACGAAAAGAACAGAGAAATTGCCTTGTTCTTTTCTCAGGCAGAAAGGAAAAGGAAATTTTATGTTCATTTCACTTTACAACATATGTATCTTCATTATTACAGGCAGAACGAAAAGAGCAGGGAAATAACCTTATTCCTTTGTCAAGCAGAACAGAAAGGAAAAAGGAATTTTTCATGTTCCTTTTGCTCTGCAACACCGAGATTTACCTTCTCGATCGCAAATTCCTTATTTGATATGGAATTGCGAGACTTGTTCGAGGACTGGTGATATCGTGACACTGGAGTGTCTGCACTTAAGGCAAGACATCGTTATTTTCTCTTGATTTCTATCAGTGGTACGTCACTGATATGTTCACTTTTGGAAACAAAGCATTACGATAAAAAGGTTCCTCACGTGTGTAGAATTAATAAGGTGAGTAAAGATAAAGGACTCTTATAAATTGGGTGGTTCCATCGACTTGGATCAAAATCAGTCGTCTGATGTCAGAAGGTCAGAGTCACATCCTCAGGTTTGATTGGTGAGGAATTGTTTTGTGTGATTTCTTTGCAACTGCAGGTCGAAAACAAGAAGCTAAAATAAGTAATAATCTCCTGTTTTCGTTGTGCCCTTAGTTGTTTTTGTTCTTCTTGATATTACTAAAGACTTCGCGTTTACGGCGGTAAAAAGATGCAGTGGGTCAGGAATTGCTCAAAGATCAGGAAACCTGTATGATTTCTGCTGATTTCTTtgacgtcatccgatcaagacatctaaacaaacgtaactacttaagtatgcagaagaggagtgcgatggtcatgttttatcgttcgtcgtgtgttttttgtctaggctcgccttggaaaagattgtgccgtcaagttgttgcgttgttagatcggatgacgtcacatcctccctcgacccaactctctcttttgaactagaccattttttaattaattaatggcgggcaatcgttttgaaaattcgtagttcaaaaagtcggacttctcgtcaaagtcatggcttgaaattaggcatggtaggaacctataatacatactttcgaaatgtaaaaggaaaggtaaggtaactttttgatcatagtacaacttAAACGGAAAACGTGAACGCTTTATCTCTACAGTTGATATCAGACTTCATTAGTCAGTAAAAAGTGGCGAAATCCACCCAACAAGGGAGATCAGTGTAATTTTGCTAATGACATCGCATATCGCAAATTCACATGTACGGCCCCCAGTGGGGTGGAGCGAGTTATGTTATTTTCCACAGGGCTACGGTCACGTAATTAATGCATTATCTTCACAAGCGCTAGCCAAGAGAGGCTGGATATGAAAGCCAAAACACTTGAAAGGGTTAACCAATGGAGGAGGCACAACCATGCCATTGTATGAAAACGCGGCTGTTGAGGGAACGGAAGATATACACAAGCCAATCCCTGTCAGCCAGTTCTGAGAATACATCACTCAAATGGGAAGAGATAAGAACACGGGATTTGCCAAACTGCACAAGGTATTAACAACAACCACAAGCGCTTGAAGTTCGATTTCGATTTATTTCAATTGCAAAAATGCCATCTGAAAACATTGACATTCTAAGAATATGCGGGAAGTCAAATGAACGAACAACCTTAGACAAATGATCTTTGGGTACCCTTGAGCAAGTCTTGCCATCGTGACCAATTGGCGTTTTGCCGAATGCCTTTGACCCTCCCCTTAAAACCAATGTTGACCCAAAGGAAACTGGTGACACTTGTCAACACGAATATTTAACATTCAACATTCACTATAACGGGAAGGGAGAAGGTTGGCGGTTCATTTGCACATCAAATTACCAGCTATCACTTCAAAACTCGTTTAAGAATCGGAGGCGTAACTCAGTAATCGGCAGCGAAACCAGACCCTGTAACTTTTGTCCATGATTTTTCAGTTTTGTTAGTTTATCTTCTTTTCTTATTCCAATTTAACATTTGATTTTATTCTCTTTTTTTCTTTGTAGCTAAAGAGCTAACCTAACTCAAATTCACTATCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
P10586	Receptor-type tyrosine-protein phosphatase F OS=Homo sapiens OX=9606 GN=PTPRF PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000060 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR051622 all species →	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051 all species →	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0256.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.