Gene detail

Detailed information of amic_s0259.g22.t2 in Acropora microphthalma

Genomic Location: sc0000259_pilon:255396...279802
NR annotation: XP_029192581.2, E3 ubiquitin-protein ligase LRSAM1-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0259.g22.t2

ATGGGGGTTGCGGGATCGATATCCCGTGAAATGCCGCTATTTAAGCAAAAGAAAGTTAGCAAGGATGAGTCTAAAAGGCGCGTCGAGAAATGCTTGGTTGTGGCAAAAGAGTCTCCTGAGCCAGCATTTGATTTATCAAAATGTGGAGCAACAGAGGTTCCCAAAGGAGTGTATTCCTTGTGTAAAGTGCTTCAAAAAGAGGCTCTCTTGATGTTTGATAATGCTCTCACCAATCTCAAGGGCGGAGGAAATTTGAAGGATCTATCTGCCTTGAGGGTTTTAGATCTTCATGACAATTTCATCACTACCCTTCCAGCTGATATTGATCAATTGAAAGCACTTCAGGTTTTGAATGTTCAGAACAACAAACTCAAATCTCTTCCTCCATCTATTGGGAACCTGCCTTCACTGCAAACTTTGAATCTCCAAGCTAATGACCTTCATGCTCTACCGCCCGAAATTGGGAACTCAAAGAGTTTAAGGACACTTAACATCTCAGGAAACAGCAACCTTCAGGGAGTACCACCAAATTTGGCTCATGTGAGAACCATAGAGACCATTGTTCTTGACACAGGTAGAATCAGTTTTCCTCCTAAAGATATATCATCTGAGGGAACAGCCTCAATCATGAAGTATCTTTGTAAAGTGGCTGGAATAGAATATGTCCCTCCTTCCAAGCACCTGTTGAATGTGTTAGATCCTGTTGGAAATGATTCTTCCTCGAGCAAACATTGTGGTCCAACACCAGTTGATGATTTGATAGCTAATACATTATCACTTCATGAAGCAGAAAAGGAGAAAAGAAGACAGCAACTTCTAGAAATTGAGAGGCAGATTCATGAAACAGAACAAGAGCAGCAAGCATTGGCTGCTTTAGCAAACAAACAACGCATTGATCTGGTGGACAAGATAAGAATTGCTGAAGCCGAAATGGATGACCTTACCATGCACCAACAACAGCAACAAGATCTTGAACGACAAAAGCTGGTCTCAGCTATGGCAGCTGATGAACAGCTGGCCAATGACACAGTGGCAATGATATTGCAAGTCAATGAAAGAGCTCAGAAGACAGAAATTATATTAGATGAATTGGAACGGGAAAGGATGAGAACAGACCATCTTGTTAAGATTACACAAGAAGAAACAGAAAGACTTAAAAAGGAAGAAATCTTGGCTTCTATGGCTAAACTTCTGGAAAGCCAAGAAAGCCAAGGCCGGCTTATAAGAGAATATGAACGATCGAGAGAGAAAGCTGCTAGTCAGGCCATGAATGAGTCTTGGGAAGCTGACATGCGCTTGGTTGGTATTCTGAATGAACAATATGATGACCGAGATGCGTTGATTTCAGAGATTTCCAAGGAGGAAAGAGCGCAAATGGAGGCTATCCAAGCCCTGCAACTTCAGACAGATGCAAAGCATTGTCGAATTACAAACCAGATCTCAATGCTGCAGGAGGAGCTATCCAAGTTGACGTTAACAGAGTTAGACAAGCGAGATGAACGGCAAGATGTTGAGAGGACTGTTTTGGAGTCTAAGAGAGAAGCTATGACGAGATTACTGGTTCAACTTGTCGGTGAGCAACAGAAGAGAGAAGATGAACTCATGAAGAGGCTGGTTGAGATGGAGCACAAGCGAGAGGCAGATGTGGAAGACTACTGGCTTATACAATATCAACGTTTATTGGAAAAGAAACCAAATTCTTTGCTTGAAAAGCAATGCGACGGTCCTCTTTTGGAAGTACTTGCTGAAGCAGAAGCACAAGATTGTGCTTCACATTTCGCTCGTCATCGCATCACATGGGAAATGTTGAAAACCATGACAGATGAGGAGTTAAAGGAAATTGGGATTCATCAGCTTGGTGTACGGAAGGCAATATTGAGGGTTGTTCAGGAGCGGCTTCAGTTTGAAGTCAAAGCAAAAGAAAAGGAACAAGAAATTGAAAATCCCGAGCTGCCTGTCCCTCAGTCAGAGCCCCATCGACCAACAGCCCCTCCACCTGTGGTGGAACACCATGACATGGCCATGGAATGCGTGATATGCTTGGATCGGAAGTCTGACGTGGTGCTGTTGAACTGTGGTCATGTGTGCTGCTGTTTCACGTGTTCCAGCGCTTTGACCACTTGTCCAATGTGCCGGAAACCAGTCGTGCAGCGGGTTCGAATATTCATCTCATAA

Transcript

amic_s0259.g22.t2

ttaaaaactgccgtctcgaccttttactttttaatacgtattgCGTGACTCATATTTTTGGGTTTGCTTATTGTGTTTTTACGATGATTTGCCCTTTGATCTTTTGAATCGACTATATCTCGAACATTTTGTTAGCGCGCTTTGTCTGTAAATTGTTTCAGTTGAGTTTAGTCACCGTTTTGTTCATTGTTATTTCAATGTCTTGATCATGGGGGTTGCGGGATCGATATCCCGTGAAATGCCGCTATTTAAGCAAAAGAAAGTTAGCAAGGATGAGTCTAAAAGGCGCGTCGAGAAATGCTTGGTTGTGGCAAAAGAGTCTCCTGAGCCAGCATTTGATTTATCAAAATGTGGAGCAACAGAGGTTCCCAAAGGAGTGTATTCCTTGTGTAAAGTGCTTCAAAAAGAGGCTCTCTTGATGTTTGATAATGCTCTCACCAATCTCAAGGGCGGAGGAAATTTGAAGGATCTATCTGCCTTGAGGGTTTTAGATCTTCATGACAATTTCATCACTACCCTTCCAGCTGATATTGATCAATTGAAAGCACTTCAGGTTTTGAATGTTCAGAACAACAAACTCAAATCTCTTCCTCCATCTATTGGGAACCTGCCTTCACTGCAAACTTTGAATCTCCAAGCTAATGACCTTCATGCTCTACCGCCCGAAATTGGGAACTCAAAGAGTTTAAGGACACTTAACATCTCAGGAAACAGCAACCTTCAGGGAGTACCACCAAATTTGGCTCATGTGAGAACCATAGAGACCATTGTTCTTGACACAGGTAGAATCAGTTTTCCTCCTAAAGATATATCATCTGAGGGAACAGCCTCAATCATGAAGTATCTTTGTAAAGTGGCTGGAATAGAATATGTCCCTCCTTCCAAGCACCTGTTGAATGTGTTAGATCCTGTTGGAAATGATTCTTCCTCGAGCAAACATTGTGGTCCAACACCAGTTGATGATTTGATAGCTAATACATTATCACTTCATGAAGCAGAAAAGGAGAAAAGAAGACAGCAACTTCTAGAAATTGAGAGGCAGATTCATGAAACAGAACAAGAGCAGCAAGCATTGGCTGCTTTAGCAAACAAACAACGCATTGATCTGGTGGACAAGATAAGAATTGCTGAAGCCGAAATGGATGACCTTACCATGCACCAACAACAGCAACAAGATCTTGAACGACAAAAGCTGGTCTCAGCTATGGCAGCTGATGAACAGCTGGCCAATGACACAGTGGCAATGATATTGCAAGTCAATGAAAGAGCTCAGAAGACAGAAATTATATTAGATGAATTGGAACGGGAAAGGATGAGAACAGACCATCTTGTTAAGATTACACAAGAAGAAACAGAAAGACTTAAAAAGGAAGAAATCTTGGCTTCTATGGCTAAACTTCTGGAAAGCCAAGAAAGCCAAGGCCGGCTTATAAGAGAATATGAACGATCGAGAGAGAAAGCTGCTAGTCAGGCCATGAATGAGTCTTGGGAAGCTGACATGCGCTTGGTTGGTATTCTGAATGAACAATATGATGACCGAGATGCGTTGATTTCAGAGATTTCCAAGGAGGAAAGAGCGCAAATGGAGGCTATCCAAGCCCTGCAACTTCAGACAGATGCAAAGCATTGTCGAATTACAAACCAGATCTCAATGCTGCAGGAGGAGCTATCCAAGTTGACGTTAACAGAGTTAGACAAGCGAGATGAACGGCAAGATGTTGAGAGGACTGTTTTGGAGTCTAAGAGAGAAGCTATGACGAGATTACTGGTTCAACTTGTCGGTGAGCAACAGAAGAGAGAAGATGAACTCATGAAGAGGCTGGTTGAGATGGAGCACAAGCGAGAGGCAGATGTGGAAGACTACTGGCTTATACAATATCAACGTTTATTGGAAAAGAAACCAAATTCTTTGCTTGAAAAGCAATGCGACGGTCCTCTTTTGGAAGTACTTGCTGAAGCAGAAGCACAAGATTGTGCTTCACATTTCGCTCGTCATCGCATCACATGGGAAATGTTGAAAACCATGACAGATGAGGAGTTAAAGGAAATTGGGATTCATCAGCTTGGTGTACGGAAGGCAATATTGAGGGTTGTTCAGGAGCGGCTTCAGTTTGAAGTCAAAGCAAAAGAAAAGGAACAAGAAATTGAAAATCCCGAGCTGCCTGTCCCTCAGTCAGAGCCCCATCGACCAACAGCCCCTCCACCTGTGGTGGAACACCATGACATGGCCATGGAATGCGTGATATGCTTGGATCGGAAGTCTGACGTGGTGCTGTTGAACTGTGGTCATGTGTGCTGCTGTTTCACGTGTTCCAGCGCTTTGACCACTTGTCCAATGTGCCGGAAACCAGTCGTGCAGCGGGTTCGAATATTCATCTCATAATTTACGCGACTTGTATAAATTATACCAAGGGTAGAATGCCATAATAATCTCAGTAACATAAGAGTTGCTGACTGTGTCTTGCTTTGTTAACCTGCTTAGCTGGCAATATCTGTCAGTTTGCTGAAGCACGCGACGCAAGCTATCATTTTGTACATTTCCATCACTGTAATACAGGATTCTAGATGGCTTACTAGTGTTAGCCCTTTTTATAAAATTATTAGCTGAAAAACAGGGGCTAGGAAACCTGCAGAGTTTGGTACTGCAGCTGGGTTTTATGCCTGAGCCTCTCACGTTATACCAGGAAAACCATAATGTCTGGTTTTGTTGAGTTATTTAGTGGTTGGTCAATTTTCTTTTGCCTCTATTGTTCAAATGTTGGACAGCAGTATCCACAGGGTAAATCAACATCCATTGGATAAAAGCTATCTCAGTTAATTATTGAGTATTCCCTTTTATTGTGATTCACCCAGTTAGCACTGTCCTGACTTTGAACCATATTAACCAGCTTAGTTCTCAGGGCTTTTCTGTCACAAAAAGGTAAAGCTCAGGAACGAGGTTGCCCCTGGTTCAAACTGTGGCAGCAATCAAGTGAGCCCCTGGTTCAAACTGTGGCAGCAATCAAGTGATTGACTAGGCTTTGTGCAAAAAATATTAACTTCCTTTGGAACAATATAATACAAATTTAGATCTCAGCTATCGAGATTTAGTATAAATACAATATATTAGAGTCATAGGGCAAAGTTGCTGTAAATAGTTCAATTACCCAGCCTATTGCGACATCACTGTTGCTTGTGTCAGCCCAAAAAGTGTGGGAAGTGATTGTTAGAGGTGGCCTCCCCTACATTAACAGAAAGGCTAAAAAAACCGCCGTATTCTTTGGAGCAAGTCATTATTGTTTGAATTCATTAAGGTTGGCAGTAACTCAGTGCCACTGTAAAACTTTCAGCTTGTATGTGTAAGGAAATGTTTTCTTGAACTTGCACATTAAAATTTAACAAAATAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80ZI6	E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus OX=10090 GN=Lrsam1 PE=1 SV=1
Q6UWE0	E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens OX=9606 GN=LRSAM1 PE=1 SV=1
Q5M7X9	Mitochondrial ubiquitin ligase activator of nfkb 1-A OS=Danio rerio OX=7955 GN=mul1a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003925 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF12799 all species →	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR050216 all species →	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR025875 all species →	Repeat	Leucine rich repeat 4	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48051 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10641	LRSAM1; E3 ubiquitin-protein ligase LRSAM1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.