Detailed information of amic_s0263.g16.t1 in Acropora microphthalma

Genomic Location: sc0000263_pilon:232581...246955
NR annotation: XP_015763016.1, PREDICTED: serine/arginine repetitive matrix protein 1-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P36626Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rec8 PE=1 SV=2
Q8W1Y0Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana OX=3702 GN=SYN4 PE=2 SV=1
Q6TEL1Double-strand-break repair protein rad21 homolog A OS=Danio rerio OX=7955 GN=rad21a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006844 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04824
all species →		Rad21_Rec8Conserved region of Rad21 / Rec8 like proteinFamilyInterproscan
PF04825
all species →		Rad21_Rec8_NN terminus of Rad21 / Rec8 like proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR023093
all species →		Homologous_superfamilyScpA-like, C-terminalInterproscan
IPR039781
all species →		FamilyRad21/Rec8-like proteinInterproscan
IPR006909
all species →		DomainRad21/Rec8-like protein, C-terminal, eukaryoticInterproscan
IPR006910
all species →		DomainRad21/Rec8-like protein, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12585
all species →		SCC1 / RAD21 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0007062
all species →		Biological Processsister chromatid cohesionInterproscan
GO:0008278
all species →		Cellular Componentcohesin complexInterproscan
GO:0034991
all species →		Cellular Componentmeiotic cohesin complexInterproscan
GO:1990414
all species →		Biological Processreplication-born double-strand break repair via sister chromatid exchangeInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0263.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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