Gene detail

Detailed information of amic_s0263.g18.t1 in Acropora microphthalma

Genomic Location: sc0000263_pilon:272046...304125
NR annotation: XP_029203856.2, lymphocyte cytosolic protein 2-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0263.g18.t1

ATGTCTAACGTGTCAGAAGATATTGTAAACGGTTGGGATGTGGACGCAATGGCCAATTGGCTGAGGAAGGAGAATCTCCATGACTGTGTTAGACCATTCTTGTTGAAGAAAATAAATGGATTTTCCTTTCTGAATCTGTCAGAATATGATCTTAAAACCTTTCAAATATCTGCAGAGAGTAGAAGAAAACTAACAAGATTACTTAAGAGAATGAAAGCAAAGAAAAGTAATGCTGTTCATATAAGTCCAGAAAATGGATCTCGGGGGAGAAGAGAAGCTAAAGTGCCCTCAGCTCCGATTCCTACTCATGCTTTTCAGCAAGATGACGGTGAAATTGATGGCTGGGGCTCTGATTTTGACTCTGAGGATGAATTTGATGATGAGCATAATGAAAGTTGCAGTGATGGGGAGTATATAGATCCTGAAGTTGATGAATCTCAGAATGCAACACAGAAGGAAATTGCAAATAATATTATTCAAGGTGGCTTGGTTGCCCAGCTGAGGGCAGGACTAAACATTAATGGAAGCATGCAACGGAATTGCGTTGACGAGCTGCGATCAGGTCTAAAGTTTAATGGAAACATGCAAACGAATTGTACTGATCCTGCTGGAGAAGATATATATGATCTTCCTCCTGATGAAGAAGAAGATGTCACAGAAGAATTATACGAAGAACCAAGTGATGACTCTGGTTCAGCGATCGTGGTGCGCCCTTTGGACAAAAAAAAAATCATAAGAGTTCCTTCATCTGAGCGAGGAGAATATATTGATGCCAGGGCCCCAAAGTACATTGACAAAGGGGAAACAGATCCCTGtcctcctccaccttctcgtcctccAAAGTCAGGCCCTAAGCTGATCAAGCCACCTCCTACAAAGAAACCTCCAACACCTCCACCAGAACCGGAACTTTATGAGGAGGTGACAGATGAAGATCAGCCTGGTTGTTCTCAGGTTCTTGAGGAAAATTCCGTCGGTGTTGAAGTGTATCAGCCGTGGGATAATGATCCCATTGAACAACAAGAAAACTACGAAGTGCCAGATACCCATGAGGGCGACACTTACGAGGTCCCTGACGATGACGAACAGGAAACGTATGAAATAGTAGATGGAGCAGAACAAGCTCCCCCGGGGCGGCCACCCCCCAGAGGCGCAGGCTGGAGTCCGTCCAAAAGGCCTCCAGAACAAGAAAAGCCAAAACCCTCATTGTTTAAAAAACCGTTGGAGCAGAAGCCAGCAAAGCCCATGCCATCCTCCAAGCCCCAATTCAGTCCGAAGCCAAGTGCCCCCAACCCTCCTCTTGAGAAGAGATCTTCACGGTTGTATCCCAATCCAAGTAAACCAGGCTCCCTAAAAAGGAACTCGGAAGCACTGCCACCACCACCACCAACAAAACAACAGGTGTTTCCTCCTCATCAAAATATGTCGCAGAAGAAAGAGGAAAATATCAACGAGAGACGAGTCATTAATGAGATTTCCAAGAAAGCAATTCCTTCCCCAAAGCTTCCACCACCCAGAAAACAGACGCCGCCTTCTGTTAACGATGACTCACCACCCCTTCCGCCCCGGCCAGGGGCAAAGCCCCCTCTAAAAGGAGCAAAAGTCAGTGATTCAAATAATAGAGATGGCGCTGCTGGACCCACTAGTCCTATTACAAAGACCCCTCTTCCTCCAGTGCCATCGCAACCAAGGGGCCAAAATGACCGGCTTAAGGGTTACCCTTGGTTCCATGGACCCTTGGACAAGAAAGTGGCGGAAGATGCACTGAAAGCCTGTGGCAAGCAAGGAGCCTTCATTGTTCGGAACAGCTCCAAAGATCCCAATAACTATTCCATGTCTTTGCTGTACCTTGGAAATGTAAAACATCTTCGAATTCCTCGAACCAATAACAAATTCGTCCTTGGAGACAGTGGAACAGTGGAATTTAACACTATCGAAGAGCTGGTTGCCCACTACAATGAATGTCCTGTTGATCTGAGATCTGGTGGCTCCACCACTCTGACAGTTGCCTGTCCAGTGAAATAA

Transcript

amic_s0263.g18.t1

GAAGCAACAGGAAGCCATGTTTAGTGTTGAGGCATTCTACTAGAAACTGTACTTACTCTGTACGATAATAAAACCCCCAGGAAAAGATGTCTAACGTGTCAGAAGATATTGTAAACGGTTGGGATGTGGACGCAATGGCCAATTGGCTGAGGAAGGAGAATCTCCATGACTGTGTTAGACCATTCTTGTTGAAGAAAATAAATGGATTTTCCTTTCTGAATCTGTCAGAATATGATCTTAAAACCTTTCAAATATCTGCAGAGAGTAGAAGAAAACTAACAAGATTACTTAAGAGAATGAAAGCAAAGAAAAGTAATGCTGTTCATATAAGTCCAGAAAATGGATCTCGGGGGAGAAGAGAAGCTAAAGTGCCCTCAGCTCCGATTCCTACTCATGCTTTTCAGCAAGATGACGGTGAAATTGATGGCTGGGGCTCTGATTTTGACTCTGAGGATGAATTTGATGATGAGCATAATGAAAGTTGCAGTGATGGGGAGTATATAGATCCTGAAGTTGATGAATCTCAGAATGCAACACAGAAGGAAATTGCAAATAATATTATTCAAGGTGGCTTGGTTGCCCAGCTGAGGGCAGGACTAAACATTAATGGAAGCATGCAACGGAATTGCGTTGACGAGCTGCGATCAGGTCTAAAGTTTAATGGAAACATGCAAACGAATTGTACTGATCCTGCTGGAGAAGATATATATGATCTTCCTCCTGATGAAGAAGAAGATGTCACAGAAGAATTATACGAAGAACCAAGTGATGACTCTGGTTCAGCGATCGTGGTGCGCCCTTTGGACAAAAAAAAAATCATAAGAGTTCCTTCATCTGAGCGAGGAGAATATATTGATGCCAGGGCCCCAAAGTACATTGACAAAGGGGAAACAGATCCCTGtcctcctccaccttctcgtcctccAAAGTCAGGCCCTAAGCTGATCAAGCCACCTCCTACAAAGAAACCTCCAACACCTCCACCAGAACCGGAACTTTATGAGGAGGTGACAGATGAAGATCAGCCTGGTTGTTCTCAGGTTCTTGAGGAAAATTCCGTCGGTGTTGAAGTGTATCAGCCGTGGGATAATGATCCCATTGAACAACAAGAAAACTACGAAGTGCCAGATACCCATGAGGGCGACACTTACGAGGTCCCTGACGATGACGAACAGGAAACGTATGAAATAGTAGATGGAGCAGAACAAGCTCCCCCGGGGCGGCCACCCCCCAGAGGCGCAGGCTGGAGTCCGTCCAAAAGGCCTCCAGAACAAGAAAAGCCAAAACCCTCATTGTTTAAAAAACCGTTGGAGCAGAAGCCAGCAAAGCCCATGCCATCCTCCAAGCCCCAATTCAGTCCGAAGCCAAGTGCCCCCAACCCTCCTCTTGAGAAGAGATCTTCACGGTTGTATCCCAATCCAAGTAAACCAGGCTCCCTAAAAAGGAACTCGGAAGCACTGCCACCACCACCACCAACAAAACAACAGGTGTTTCCTCCTCATCAAAATATGTCGCAGAAGAAAGAGGAAAATATCAACGAGAGACGAGTCATTAATGAGATTTCCAAGAAAGCAATTCCTTCCCCAAAGCTTCCACCACCCAGAAAACAGACGCCGCCTTCTGTTAACGATGACTCACCACCCCTTCCGCCCCGGCCAGGGGCAAAGCCCCCTCTAAAAGGAGCAAAAGTCAGTGATTCAAATAATAGAGATGGCGCTGCTGGACCCACTAGTCCTATTACAAAGACCCCTCTTCCTCCAGTGCCATCGCAACCAAGGGGCCAAAATGACCGGCTTAAGGGTTACCCTTGGTTCCATGGACCCTTGGACAAGAAAGTGGCGGAAGATGCACTGAAAGCCTGTGGCAAGCAAGGAGCCTTCATTGTTCGGAACAGCTCCAAAGATCCCAATAACTATTCCATGTCTTTGCTGTACCTTGGAAATGTAAAACATCTTCGAATTCCTCGAACCAATAACAAATTCGTCCTTGGAGACAGTGGAACAGTGGAATTTAACACTATCGAAGAGCTGGTTGCCCACTACAATGAATGTCCTGTTGATCTGAGATCTGGTGGCTCCACCACTCTGACAGTTGCCTGTCCAGTGAAATAACACAACCGTCTTTGGCCTAGAGGATTGTATAAATATTCTGCCGCCAGTTTGTCTCGGCTAACGTTGTTGTTGTTCCATGTTAGCTTCAAATTTTCTTTCTAGCTTAATTTAGTTACCAGGAATTGTCGCTAACTAAAATGCTGCAATGACTTTTTGCAATGACTTTTATTGTTCAAAATTCGGGGCGACTAGTGTAAAATGTATAATAGAGAGACGCGAAGATCTGCTATGATTGTGTTTAGGAACACGGTATTGACATTTGATATGCTGGAGTGATCTACAGGGATTTCGTGAAAGCAATTGACAGAGCCTCGCGATCTGAGATTTCAATTTCAGTCTTCAAATTAGAAGTTAGAACTCGTTTCAGGACGCGGGTGTCTCTGGTTTCTTTTGTTTGCTATTGTTTTTGTTAGTTTTTGTGGAGGAAAGGGGTTGGAAGTTTCTCCCATTGAAGGTGCCCTGAAAAGTGCAGGGCGATGTTTCAACGTTGTTCCCAGGGTCTTCTCATAATCCTGGAACAAGGTCGAAGAAtcatcgccatctttttcgtcatcgttgaaaggtcaccatagcatcgttatcgtcatcattatcCAAAACAGAAAGTAACAACGCTTGTAGCCCGCTTAGCAAACGTTTCCGTGAAGAGGTATATCGGAATGAGCCAAAAAGCCATCGACGAGATAGGGGAAGAGGAGGGAAGGGAACCTTTTTTTGGCTCAAGTCTACCTCTCTCGCTTTTTGGTCTCATCTCTATTTCAGCACTACCGAAACATGTCTCCGCTGACGGGAACGCTTGCCATGGAGGCTACACCTGTTGaataggtcactctcgaattgtgctagacaaaagaagaaatccgaggttgaggttgagaggacaaatttgcatttttcttcgtttgtataacggaaaCTTTAAGTGATGGACCTTATAGTTTTTATAACATTTTGTAACTCATTTATCTATTTTTGTAGATGCATATGCATTGAAATGTTATATTTATATGAAAATATTTCAATGAACAGTTGTAATTTAAAGTGTTTATATAGTGGGGATGCAGTAGCACTGTCTAAAGTAGCTTGTTTGGGTGAGGGGGGGGCCGGAGATTGTAGGGTATGTTTGTACTAGGAGCATTGTACAGGCGCCATGGTACAATGCTATTTAGACAATCAATTTAAAGGTTCAGTTTTGCAAACCAAAAATCATGAAGAAAAGCTCATTTTCGAAAAATGGACGAATCTAGTTTTAATTATTTTTGTAGCCATGATACTGTTTGTAAAATGTATTTGCAAATGTCTGTAACGAAAACTTTTATAGTTGCTAAAAAGCATGTTATGCCTCGGGTATTTGTTGTAAATGAGTTCATTCTATCCTCTGCAAGTGCCTTTTTTGCTGCTTGAAACCAGCCTTGAATTCCCGTTTAGTAAGTTCTGACAGTGAATAGATCACTTTACCCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20936	Ras GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=RASA1 PE=1 SV=1
P50904	Ras GTPase-activating protein 1 OS=Rattus norvegicus OX=10116 GN=Rasa1 PE=1 SV=1
P09851	Ras GTPase-activating protein 1 OS=Bos taurus OX=9913 GN=RASA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004547 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR051184 all species →	Family	Tyrosine-phosphorylated adapter molecule	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969 all species →	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0263.g18.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.