Gene detail

Detailed information of amic_s0263.g24.t1 in Acropora microphthalma

Genomic Location: sc0000263_pilon:372552...383125
NR annotation: XP_029203888.2, rab9 effector protein with kelch motifs-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0263.g24.t1

GCGACTGCATCATGTAGCAACCCATCACGAGTCCTGAAGCAAGTTATACACAGACGGAACATTATATTTTCTTAAGAGGGAATGGAGATTCTCCCAATCCTCGAGGCAAACAACACTCCAAAACCAAATTTGTGGTACGTTCTCTCACCAGAAGGGGAATGTCCCTGCATGAGAGTCGGTCATACATGTACGTATTTCGCAAAAGGTCAGCAAAGACTTGTTTTGGTGATTGGAGGAGCGAATCCTGATGGATCTTTTGCTGATGTCCATATATTGAACTTAGATAAGTTGGAGTGGAGCTGCCCAGAATGGAAAGGTATCTCCAGTCGCTATGAACACTCAGCATTCATTCCTAACTGCTGTCCAAACAAAGTTTATGTATTTGGTGGAGCTCAGCAGACCACAAACTTGAATGATATTCAAGCCCTTGACTTAGAGAAAGGTCACTGGGAAACAGTTATCACAAGTGGGAGTCCACCGTCACCAAGAACATGTCACTCCATGGCATCAGTTGGCAGTATGTTGTATGTCTTCGGCGGGGGGTTAAGTGGTCCTGATCCTGTTTTAGATACTATTGTTCATAAATTTAATGCAGAGGACAATAGCTGGAACCAACTAGAGGTGACTGGGCATCCACCAAGCTGTAGACATGGCCATATATCTGTTGCTGTGGGAACAGACATTTATATTCATGGCGGGATGTCTGGAATAGACATGTTTGATGATCTTTACAAATTTAACTCTATTACACACACTTGGAGCAGATTGGAACCAACTGGCCAAGCACCATCTCCAAGAACAGCTCATGCTGCTACTTGCTTGGGGAAAGTGATTTATATTCATGGTGGAATGAATTCTGTCGGTGTTGCCCTTGATGACCTCTACTCACTGGATACAGGTTGTGGGTACTATTGTTAATGTGTCACACATGCTCTATTAGTAGCAGCAAAGCTAAATAGCAACTAAAATTTACCTGAATCAACCCATctagagactaaaagctcaaatgctaagactaatggctcaaatacttaagactaaagctcaaaaatactaaagactaaagctcaaatactaaagactaaaagctcaaatactaTTCAGTGTTCACAAAAGAATAACAATTGTAACTTGTTATTAGTAAACCACTGTTAGAGTATGATGCTTGGGTGCGGCCATGTTGGGGGGAACTAAACAGCAGAACTTTAGAAGCTCTGCAAGAGCACGTAGGAGGAGTAGTAATGAATTAAGGCATCTAGTGGTGACACTGCACTGAAAGCCTTAAAATGGCTAACTCTAAATTAAGGTCCAAGTGCGAAGACTATATCCTTAAGCTTGTGAGGAAATGCATAGATGATGACAGAGAAAGTACATTGCTGGAAGGTCAAACCAAGTCTGCACTGCTTATTTTTGGTGGAATGGATACTCAAGGAGAGATTTTTAATGACTCTTTTCTTTTGTTGCCTAGTTTTAGACAATAGTAGCTCTTAAAATCTTGCTAAAAAAATGGTTTTATCAGTTTGCAAGTGTAGTTTTTCCTAGTGCTTAGTTAAATCAGTCAAAAGGATTATGAAGTGAATGCACCAATAACTATTTCATAGTGTACTTTGTACATGGTTTATCACTTCAATGAGAGGGATTCGTTATTGTGGCAGGCTACAAGTCAAATCACATTAGCTTTATATCATTATTATCCAGCAAAAAGTATTTTTATGCCTGATCAAAGTTATACTGAAGTGATTTTATTTGTAGTCTGTTAAGTGTGTTAAAGAGAGGGAAAGTGCAAACAGCAAGGGAAAAACTACTAAATAAAAATATTGAATACTGAACTGTACCCTAAATTATGTCAGCAGGGTGAGGTTAATGCCTTCCAAGATGTATCCAGGGTTATTTTCAAGACTCAACACCCATTGTTGGTTCTCTTTATTGCTCTGAAGGAATGTTCTTCATGATGCCATTTTGCATGATTTAGTCTTAGTTGTAGACTTCTCAACAGATGGAGCACTGGGGCTTAGCTTTATAACCTTGAGACTAAACCCTGATCATTGTTTTTAATTGACTTATTTTCAATCTGTGCCCTTCAAGGATATCTGGGACCTGCAACAAGCACTTAGCAGATGATGTGCACCATATAAGTTAGCTGCATTTTGGTGTTTCTTGCAATTATTAGATAttagtaaaatccaactagtggtctatcatcaatgctgcgttctgattggtttagctactagtaggctatatgttatagcccactagtagcgaaaagcgcccgccatatttttaattaatgttttgccggtaaaaaaggattgatgtctagctttaacttgcgaaagatgtttagtctcgatatttttttgaccaactagttggattttactaaaacaattattcctctcgctctcatagcctctgagtcaatagcccattcgagcttgaggaataattgttaattagATCATGCAACAAACTATCACACACTATGGTCAGCTGCTAGCTCTCTGAGCCAAAACCGCAAAATTATCCAAGACAATAAGACGTTTTCCAAAAAATTAAATTTCTCTTTTAAGTATGTTTTTACTAATACTGGATAACACCAAATGTATTCATCTATGTAGCAAACATCAGTGTTATAAAAGATTCACTGCAGCCTGTACCAAAAATAGTATTAAATTACATTTCCTAGTAATAAACTTTGCTTTATTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z6M1	Rab9 effector protein with kelch motifs OS=Homo sapiens OX=9606 GN=RABEPK PE=1 SV=1
Q8VCH5	Rab9 effector protein with kelch motifs OS=Mus musculus OX=10090 GN=Rabepk PE=1 SV=2
Q5EA50	Rab9 effector protein with kelch motifs OS=Bos taurus OX=9913 GN=RABEPK PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052124 all species →	Family	Rab9 effector with kelch motifs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46647 all species →	RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0263.g24.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.