Gene detail

Detailed information of amic_s0264.g6.t1 in Acropora microphthalma

Genomic Location: sc0000264_pilon:210797...241375
NR annotation: XP_044179247.1, uncharacterized protein LOC114969741 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0264.g6.t1

ATGCAAGCAATCATTGATTTACAAGTTGTACCATTTTACTGCAGATGTTCAcctagtctaagaacattaggaagaagggcatttacgcgcacggacgagcattcgggattaaatccactccaggcagctgtcttagaaggagatgttgacaccattgaaaaagtaagtaaccatctagagaactttgtggaagagatcaactgccgaaaaactggcgagaaggcttccattttccccggaaagtcagcagctgagattttggcagctagtaaatggagggagaaaagtcattctctgattggcacaatctgcgaaaatttcgttgagactgacgtaacactaacagagctgcactcctgcgccaagcgaaatgacgtagaaatggcgattgaactcgttttgaatgatgggatagatgtcaatgtcgttgcaaagagaaacatcacacctttgatttgggcgagtccagcggcctcaagtttgtcaatcaaaaccctgattgatcttggtgcagacgtaaatgctcaaacattccaggagacatattttggcttctgcagtggaacggcacttcgttgtgcaatccatggcaacaatgcagctgtcgttaaagtgttacttgccaacaaggcggatcctaatattgctgaccaacaaggaaatacagttctacattcatccacttccttgcggtttttcaacatttcacagctgctgatagactctttctgcgaaatcaatggaagaaacaacaggggtgaaacgccacttcattctgctgttctttgtaagaatgtagctgatgttaaagttttacttaggaacaacgccgatgcgaatattcaggacaatgagggaaatacccctcttcatatatctacgcgtgagggattctccgacatttcacagttgttggtagactctggctgcaaactcaatgtgacaaacaacatcggtgtaacgccactacattctacggttgatggtgagaatgtagctgatgctaagcttttacttaagaacaaagcggacgtgaatattcaggacaattggggaaatacccctcttcatatctctacgcgtgagggattctgcgacatctcacggttgttggtagactctggttgtaaaatcaatgtgagaaacaacatctctataacacctcttcattctgctgtctatcgcaagagtttagcttgtgttgagcttttacttaagaacaacgcggtcgtgaatattcaggacaattggggaaatacccctcttcacatatcgtcgcgtgatggatcttccaacatttcacatttgttgatagcctctggctgcagaatcaatttgagaaacaacttgggcgaaacgcctcttcattctgctgttcgtgttgagaatgtagctgatgttgagctcttacttaagaacaacgcagatgcaaatttacaggacacatcaggaaatacccctcttcatatatcttcgcgtgatggattttccaacatttcacagttgttgatagactccggctgcaacaaagacctgaaaaacAGGGAAGGTCGGAGGCCACTTGATCTTGAGCCTCGTCCTCCTTTTTCTGGTGATTTAGAGGAAGATGAACGAAATAGAGGATATGCATATGCATCGACGGCGAGTTTGCGACGTCAAAGTTTCGTTGAAAGTGAAGATAAAGTTGGCAAGCTAAAAGAGCAAAGCGGGATAGGAGAGAATCGGGCCCTGTTAGAAAAACGACCGGAATTATCAAGCGAAGAGCCCAAACTTGCAGTTACACGAAAACTGGAAGGGACGAAACGTGGAGCATCAAGAGTGAAAAAAGCGACACAAATACCAGCAGGTGTGAAGTTTGTTGTCAGTGGCAAAATGATGTCACAAGATGAATTATCTGAACAATCAGAAGCAGTGCAGATTTTGCAGGGGCAAGTattaaacattactctgctagcaagtgaatggaagtcatcagctggtggtttgtcaacattaaatagggagcttgcaattcatctgtcacagatacaaaatgtgaaagtttcactcctggttccagagggtgcttgtaatggtgaagacaaaacggaggctacaggttttggtatcagtattcttgatgcacaaaaatgtgttggtgttgagcctcttctttggttgagcaacccacctcaatatcaccccatagatgttattgttggacatggtgtgaaacttggttgccaagtacaactcattaaaagacaggcacaattccaagattgcaagtgggtacatgtggtccatactgcaccagaagacctcagtaaatttaaggactatagtaatccaatttcaagaggtgaagagaagcactgggatgaggttgatctttgcaagtgtgcagaccttgttgttccagtgggaccaagacttgcaaaggcttatcattcatatttacaagaatgcaaaaaagatgaggacttttttgagcttattccaggtctttttgagcgcgagtttagagatttacctgcaaagcagaaacccaaagataagagtgatgatttcattgtattgttgtgtgggcgtggtgatgaagaggattttgaattgaaagggtacaccactgccgtcaaggcatttgctgatcagcgactgaagggaaaacattactctttgctgtttgttggttcacctaaaggaaagcaggatgaggtcaggaaaaggcttctcaaacatggaattacaaatgaagagctgacagtgagagaatttgtaaagagcagagaaagaatgaaggagcttttttgtgaagtggatatggtcatcatgccttcaaaatcagaaggatttggccttgttgcccttgaagccttgtcagctggtttacctattcttgttgggagcaactcaggatttgcaagagcaataaaaaacattccctatggaaaatgtagtattgttggggattctggaaatcctgctaagtgggctgaagcaattgaggatgttcgtgatagacatggaatggtccttgaagaaagtgaaatcctgaaagagcattatagcaagaaatactgttggaaaaaacagtgtgaagaacttgttgCCAGATTATGGAAGATGGTTCATGCAGGGGCATTTTCTGAACAGCGTTGTGTTCACGAAAGCCAAACTAATGACAAGAAGAAATCTTCGGCAGCACATGAAAACAAACAGTATGTAAAAGAAGTTGGAGGAGATCTTATCAAATGTATTATCACTATACCAGTGCTAGAGAAGGAAAAACAAAAAGTTATCTTTGAAATGTTTAATCAGCAAGTTCAAACTTATGCAGAATTTCAAGATGATTCCTCAGATAAACTACAAGGAGTGGGGAGATTGATAGCAGCCATGGTAGCAAATTATAGGCTACTGTTTAAGGGTGCTGAGAAgggctctctgatcatcattttcaattgccaatcaattgaacatcttgaacacctgtggaatgactattgctctggtcacctcgatgaaatggcagagcagtaccttgtaacagatgaagtgaaagagaagctgaacctagagacattaaaggtgaagacaaccatagaagagaaaaactatttgaactgcaggaaagttctcgtggagcGTTCAGagccttcctcttctcaaaccacagctactgatgaccagttagaacaaaggcctcttgcaatcccaaaaccagttggccaactccatccaacaccattaagtcagcacattgaggaaggttcagtGTCTGCGGGATCAAAAAATGCAGAGAAGTTGGGGGAAAGAAGATATTCAGAATCCAGTGCTGGGCATGGGACAGACACAAGTGGAATTGCCAAAGTGCTTCGGTCAGAGGAACAGTTGCCTTCAGTTTCATCCGAGACATTTTATGAACCTCACTTTTCAATGCACAAGAGTAAAAGTAATGAAGAGAAGAAAGCTTTGGCAATACCTGGAAACAGTACATCGGGAGGGTTTGGAGgagaaggtgacggaactccatcatttgcccaacaaagtgttcttgatcagggaactagcaacattgagatggccacagctgcaggcgacaaagaagtaccgGTGAGAAGAATACCACAGAACAAAATGTCTGGAGAAAAGAAAAAATCAGCTGCGGCCTGTCTTGGAGTTATTCGTCTAGACTACGATTATGAAGCAGTCCCGGGTGACATAGACCATCCCGACTCCTTCAATTGCGATGTCTACTACAAAGTTGTGCCTGGTCTCACGTTTGAAATGTGCCAGAAAGGAAAAATGACTGACGATGTTGAAAAGCGATTTAAACAGTCCATCAAATGGCTTGTGAAAGAGAAAAAAGTCAATGGAATAACTGGTGATTGTGGTTTCATGATGAACTTTCAAAGCATTGCTCGACAAATCACTAAGATCCCCATTTTTATGAGTGCCCTTTGCCAGCTTCCAGCCGTCACATGCGGTTATGCAGAGCAGGAGCAAATGATCATTATGACGGCGAACGGGAAAAGCCTGGAGCCCATGAGAGATCTGATCAGGGATGAATTTGGCGTGGATACCCAAGATAAGCGTTATAACATTGTTGGATGTGAAGATGTCCCTCATTTCGGTGAAGCAGTTGCTAAGGGAGAAAAAGTGAATACCAAAAAGGCCACGCCAGGGATCGTGAAATTGGCTCGCAAAGCACTTAAGAAGTATCCAAAAAGCAGAGCTTTTTTGTTGGAATGCACCGAGCTCCCTCCATATTCGGATGCCATTCGATTTCACACAGGTTTACCAGTCTATGATTCTATCACAGCATGTCACTTCTTCATCAGTGGACACAAGGACAACCCGAGGTTTGGCCTTGACGATTGGCAAGATGAATGGGATGGAAAGCAAGAAGAGTACCAGTTTAGAGATAACCTTACAGAACAAGAAAAAGATAAACTCGTAAATAAGGTTGAATAG

Transcript

amic_s0264.g6.t1

CTATAGGTGCAATTTATTTAAAATTCAATGAATTAATGTTAAAACATGCAAGCAATCATTGATTTACAAGTTGTACCATTTTACTGCAGATGTTCAcctagtctaagaacattaggaagaagggcatttacgcgcacggacgagcattcgggattaaatccactccaggcagctgtcttagaaggagatgttgacaccattgaaaaagtaagtaaccatctagagaactttgtggaagagatcaactgccgaaaaactggcgagaaggcttccattttccccggaaagtcagcagctgagattttggcagctagtaaatggagggagaaaagtcattctctgattggcacaatctgcgaaaatttcgttgagactgacgtaacactaacagagctgcactcctgcgccaagcgaaatgacgtagaaatggcgattgaactcgttttgaatgatgggatagatgtcaatgtcgttgcaaagagaaacatcacacctttgatttgggcgagtccagcggcctcaagtttgtcaatcaaaaccctgattgatcttggtgcagacgtaaatgctcaaacattccaggagacatattttggcttctgcagtggaacggcacttcgttgtgcaatccatggcaacaatgcagctgtcgttaaagtgttacttgccaacaaggcggatcctaatattgctgaccaacaaggaaatacagttctacattcatccacttccttgcggtttttcaacatttcacagctgctgatagactctttctgcgaaatcaatggaagaaacaacaggggtgaaacgccacttcattctgctgttctttgtaagaatgtagctgatgttaaagttttacttaggaacaacgccgatgcgaatattcaggacaatgagggaaatacccctcttcatatatctacgcgtgagggattctccgacatttcacagttgttggtagactctggctgcaaactcaatgtgacaaacaacatcggtgtaacgccactacattctacggttgatggtgagaatgtagctgatgctaagcttttacttaagaacaaagcggacgtgaatattcaggacaattggggaaatacccctcttcatatctctacgcgtgagggattctgcgacatctcacggttgttggtagactctggttgtaaaatcaatgtgagaaacaacatctctataacacctcttcattctgctgtctatcgcaagagtttagcttgtgttgagcttttacttaagaacaacgcggtcgtgaatattcaggacaattggggaaatacccctcttcacatatcgtcgcgtgatggatcttccaacatttcacatttgttgatagcctctggctgcagaatcaatttgagaaacaacttgggcgaaacgcctcttcattctgctgttcgtgttgagaatgtagctgatgttgagctcttacttaagaacaacgcagatgcaaatttacaggacacatcaggaaatacccctcttcatatatcttcgcgtgatggattttccaacatttcacagttgttgatagactccggctgcaacaaagacctgaaaaacAGGGAAGGTCGGAGGCCACTTGATCTTGAGCCTCGTCCTCCTTTTTCTGGTGATTTAGAGGAAGATGAACGAAATAGAGGATATGCATATGCATCGACGGCGAGTTTGCGACGTCAAAGTTTCGTTGAAAGTGAAGATAAAGTTGGCAAGCTAAAAGAGCAAAGCGGGATAGGAGAGAATCGGGCCCTGTTAGAAAAACGACCGGAATTATCAAGCGAAGAGCCCAAACTTGCAGTTACACGAAAACTGGAAGGGACGAAACGTGGAGCATCAAGAGTGAAAAAAGCGACACAAATACCAGCAGGTGTGAAGTTTGTTGTCAGTGGCAAAATGATGTCACAAGATGAATTATCTGAACAATCAGAAGCAGTGCAGATTTTGCAGGGGCAAGTattaaacattactctgctagcaagtgaatggaagtcatcagctggtggtttgtcaacattaaatagggagcttgcaattcatctgtcacagatacaaaatgtgaaagtttcactcctggttccagagggtgcttgtaatggtgaagacaaaacggaggctacaggttttggtatcagtattcttgatgcacaaaaatgtgttggtgttgagcctcttctttggttgagcaacccacctcaatatcaccccatagatgttattgttggacatggtgtgaaacttggttgccaagtacaactcattaaaagacaggcacaattccaagattgcaagtgggtacatgtggtccatactgcaccagaagacctcagtaaatttaaggactatagtaatccaatttcaagaggtgaagagaagcactgggatgaggttgatctttgcaagtgtgcagaccttgttgttccagtgggaccaagacttgcaaaggcttatcattcatatttacaagaatgcaaaaaagatgaggacttttttgagcttattccaggtctttttgagcgcgagtttagagatttacctgcaaagcagaaacccaaagataagagtgatgatttcattgtattgttgtgtgggcgtggtgatgaagaggattttgaattgaaagggtacaccactgccgtcaaggcatttgctgatcagcgactgaagggaaaacattactctttgctgtttgttggttcacctaaaggaaagcaggatgaggtcaggaaaaggcttctcaaacatggaattacaaatgaagagctgacagtgagagaatttgtaaagagcagagaaagaatgaaggagcttttttgtgaagtggatatggtcatcatgccttcaaaatcagaaggatttggccttgttgcccttgaagccttgtcagctggtttacctattcttgttgggagcaactcaggatttgcaagagcaataaaaaacattccctatggaaaatgtagtattgttggggattctggaaatcctgctaagtgggctgaagcaattgaggatgttcgtgatagacatggaatggtccttgaagaaagtgaaatcctgaaagagcattatagcaagaaatactgttggaaaaaacagtgtgaagaacttgttgCCAGATTATGGAAGATGGTTCATGCAGGGGCATTTTCTGAACAGCGTTGTGTTCACGAAAGCCAAACTAATGACAAGAAGAAATCTTCGGCAGCACATGAAAACAAACAGTATGTAAAAGAAGTTGGAGGAGATCTTATCAAATGTATTATCACTATACCAGTGCTAGAGAAGGAAAAACAAAAAGTTATCTTTGAAATGTTTAATCAGCAAGTTCAAACTTATGCAGAATTTCAAGATGATTCCTCAGATAAACTACAAGGAGTGGGGAGATTGATAGCAGCCATGGTAGCAAATTATAGGCTACTGTTTAAGGGTGCTGAGAAgggctctctgatcatcattttcaattgccaatcaattgaacatcttgaacacctgtggaatgactattgctctggtcacctcgatgaaatggcagagcagtaccttgtaacagatgaagtgaaagagaagctgaacctagagacattaaaggtgaagacaaccatagaagagaaaaactatttgaactgcaggaaagttctcgtggagcGTTCAGagccttcctcttctcaaaccacagctactgatgaccagttagaacaaaggcctcttgcaatcccaaaaccagttggccaactccatccaacaccattaagtcagcacattgaggaaggttcagtGTCTGCGGGATCAAAAAATGCAGAGAAGTTGGGGGAAAGAAGATATTCAGAATCCAGTGCTGGGCATGGGACAGACACAAGTGGAATTGCCAAAGTGCTTCGGTCAGAGGAACAGTTGCCTTCAGTTTCATCCGAGACATTTTATGAACCTCACTTTTCAATGCACAAGAGTAAAAGTAATGAAGAGAAGAAAGCTTTGGCAATACCTGGAAACAGTACATCGGGAGGGTTTGGAGgagaaggtgacggaactccatcatttgcccaacaaagtgttcttgatcagggaactagcaacattgagatggccacagctgcaggcgacaaagaagtaccgGTGAGAAGAATACCACAGAACAAAATGTCTGGAGAAAAGAAAAAATCAGCTGCGGCCTGTCTTGGAGTTATTCGTCTAGACTACGATTATGAAGCAGTCCCGGGTGACATAGACCATCCCGACTCCTTCAATTGCGATGTCTACTACAAAGTTGTGCCTGGTCTCACGTTTGAAATGTGCCAGAAAGGAAAAATGACTGACGATGTTGAAAAGCGATTTAAACAGTCCATCAAATGGCTTGTGAAAGAGAAAAAAGTCAATGGAATAACTGGTGATTGTGGTTTCATGATGAACTTTCAAAGCATTGCTCGACAAATCACTAAGATCCCCATTTTTATGAGTGCCCTTTGCCAGCTTCCAGCCGTCACATGCGGTTATGCAGAGCAGGAGCAAATGATCATTATGACGGCGAACGGGAAAAGCCTGGAGCCCATGAGAGATCTGATCAGGGATGAATTTGGCGTGGATACCCAAGATAAGCGTTATAACATTGTTGGATGTGAAGATGTCCCTCATTTCGGTGAAGCAGTTGCTAAGGGAGAAAAAGTGAATACCAAAAAGGCCACGCCAGGGATCGTGAAATTGGCTCGCAAAGCACTTAAGAAGTATCCAAAAAGCAGAGCTTTTTTGTTGGAATGCACCGAGCTCCCTCCATATTCGGATGCCATTCGATTTCACACAGGTTTACCAGTCTATGATTCTATCACAGCATGTCACTTCTTCATCAGTGGACACAAGGACAACCCGAGGTTTGGCCTTGACGATTGGCAAGATGAATGGGATGGAAAGCAAGAAGAGTACCAGTTTAGAGATAACCTTACAGAACAAGAAAAAGATAAACTCGTAAATAAGGTTGAATAGGGACACTATATAAATTGAAGGCAAAGGATTCTTTTTCCTCTTACGTATGTTGCataaataaataaataaataaagacataGTAGTTTTGGGATTAGATTTTATAGCCCTCTTCATGTCATCCAGTTCAGGAAATGTTCTTTTTGTGTGTATGGATGCAAATTTAAGATCATTATACTTCAATTGCTCTGTTTTTGTTGTTTTCATCTTCGACAGGTCTTCCACCGTTTTATGCCATCATGCTCTGCACCTTCTTTATAGGCGGATTCCCAATTTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
R1CW23	Dimethylsulfoniopropionate lyase 7 OS=Emiliania huxleyi (strain CCMP1516) OX=280463 GN=ALMA7 PE=3 SV=1
R1G6M4	Dimethylsulfoniopropionate lyase 3 OS=Emiliania huxleyi (strain CCMP1516) OX=280463 GN=ALMA3 PE=3 SV=1
R1F493	Dimethylsulfoniopropionate lyase 6 OS=Emiliania huxleyi (strain CCMP1516) OX=280463 GN=ALMA6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001766 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24161 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0264.g6.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.