Gene detail

Detailed information of amic_s0265.g15.t2 in Acropora microphthalma

Genomic Location: sc0000265_pilon:186407...200265
NR annotation: XP_029193800.2, exosome complex exonuclease RRP44-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0265.g15.t2

ATGGATGATAAGAAAGGCAGAAAATTTGTTTATCCAGAGCACCTCCCTCTTACGAAAATTCTATCAGGAATCAAAAGTGGAAAGTATCTTCAGGGTGTCTTTCATAGAAGTAGGGAAAACTACACTGAAGCTTATGTTTTTGTGCATGATGGAGATAAGCAGGTTTTTATTCAAAGTCTTATGCGTCTCAACCGTGCAGTTAATGAGGACATTGTTGCTGTGCAGATTTTACCAAAGAGTCAGTGGACTTGTCCATCATCAGTTGTCACCTTAACAGTGGCTGAAAatgatgatgatgatgatgaggaggatgaaaatgaggaGACAGAGTTGAATGGAGGGAACACAAACAAGGTTCTCTCAGGAAAAGTAGTTGGAATCATAAAGAGAAACTGGAGGCCATACTGTGGTGTCCTTTCTAAATCAGCAAGACCGCAGGGTACAAGGCACCTGTTCATAGCAGCTGAGAAAAGAATTCCCAGGATTGCTATCGAAACTAGACAAGCGTCAGCTTTGGAAGGGCAGAGAATTGTCGTTAGCATTGATTCTTGGCCtcaaacctctaaataccccgttGGTCACTTTGTGCGGAAACTTGGAGCCATTGGTGACAAAGAAACTGAAAATGAATTGTTGCTTCTGGAGCGAGATGTGCCACATTTACCATTCTCAGCTGCTGTGTTAAAGGACCTTCCCGTCATGCCATGGTCTATCACCGATGAGGACGTAAAGAGCCGTTTGGATCTTCGCCATATTGCAGTGTGCAGCATTGATCCGCCTGGATGCACGGATATTGATGATGCTCTGCACTGGAGAATGTTGGAAAATGGAAATTTTGAGGTTGGAGTGCATATTGCAGATGTGACGCATTTTATCAAACCAGGGACATCACTGGACGATGAGGCGTGGAACCGAGGCACTACAGTTTATCTCACGGACAAGCGAATTGACATGGTGCCGGGTCTTCTTAGTTCCGATCTTTGTTCTTTGAGGTCCAACGTCGACAGACTTGCCTTTTCCTGCATTTGGCAAATGACACCACAAGCTGAAATTGTCTCAACAACGTTTACAAAAAGTATTATCTGTTCGAGGATGTCCTTTATGTATGCTGAAGCTCAAATGCGAATTGATGATCCAAGCCAAACAGATGAGATCACTGTTAGCCTCAGGCATCTTAACCAGCTTGCAAAGATCTTGAAAGCAAAAAGAATCGAGCAGGGCGCTTTGACTCTTGCGTCTCCAGAAGTTCGCTTTCACATCGACAGCGAGACTCACGATCCAGTGGATCTTCAAACAAAGGAGCTGAAGGAAACGAATTCTCTCGTTGAAGAGTTCATGTTGCTGGCTAACATTTCTGTAGCAAAGAAAATCTTTCAACATTTTCCAGAGTTTGCTGTTCTTCGAAGACACCCGTCACCACCTCCCGCCAACTATGATGTCCTAGTGAAAGCTGCTCGCTCAAAGGGATTCGATCTTGAAGTGGATAGTGCGAAGTCCCTCGCGGTCTCTTTGGAATCCGCTCAAATCCCGGATGAGCCTTACTTCAACACCCTTCTTCGCATCCTGGCAACGCGTTGCATGATGCAAGCGGTTTATTTCTGTTCGGGTATGATCAAGGAAGAAGACTTTCTGCATTATGGTTTGGCAACTCCAATCTACACCCATTTTACTTCACCGATCAGAAGGTATTCTGATATCATGGTCCATCGCCTCCTGGCGGTGGCAATCGGCGCTTTAGATTCTTATCCAGATCTCTTAAATAAGAATAAGACACAGAAACTCTGCAATCATCTGAATATGCGTCATAAAATGGCACAATACGCTGCCCGGGACTCCATTGATTTACATTGCCAGCTGTTTTTTCAGAACAAAGCCATCGAAGAGGAGGAGGCATTCGTTCTGTTTGTGCGTAAGAATGCGCTGCAAGTTTTGATTCCAAAATATGGACTGGAGGGCACAGTATTAACGAGTAAAGATTCACCCACAGAAGTTGTCTTCAACGAAGAGGAACCTTCACTCAAAATTGGTGATGTCACCTATCGGCTGTTTGACCGAGTGCTGGTTAAAATCAATGTCAATACGTCTTCCACTGAAAACAAGTTTTTATCTTTCAGCTTGATGTCGAAAAAGGAAAACGAAGTTGAGCATCCAAAAGAGCCACTCCCCAAGAAAGCGAAGCGAAGCTAA

Transcript

amic_s0265.g15.t2

TGGCGGCGTAAATGAACACGTGCGAAGACGTCGCGCACTATCAATTTTAAGTCATAGTAGTTAGCGATCTAATTTACCGTCTTTTCCTTTTCAAAATGTTAAAGTCCAAAGTTTTTGTGAAGAAAACCCGTAAGGGTGGAGTGATGAAGATAGTGCGGGAACACTACTTGAGAGATGATGTATGGTGTAGAGTAAGTCATTGTGAAAACTGTGATCAGTCAGCTGATGACGAAAATCTACTTGATACAGCTCCATTTAGCCCTTCGAAAATCTGCAACTATCCACATTACTTGTTGCTGGATACAAATGTTGTGTTACATCAGATCGATGTTCTTGAGGATCCAGTCTTCAGAAATGTAATTATTTTGCAAACTGTTTTGCAAGAAGTTCAACATCTCAACAGCTCCATTTATAAAAGAATCAGGGACATGATTTCAAACAAAGATAGAAAATTTATAGTATTTTCAAATGAACATCACAGAGAGACTTACATAGAAAGAGGAAAAGATGAATCTTCAAATGACAGAAATGACAGAGCCATTAGGACTGCTGCTAGTTGGTATAGCAAGCATTTGAAAAACTTTCAAGTAAGCAATGATGATGAAAAGAGAATACACATCGTTCTTCTCACTGATGACAAAGAAAATAGGGAAAAGGCAATGAAATCTGGTATCATAAGCTTCACAGCTCAAGAGTATGTTGAAAGCCTTGAAGGATGTGAAGGATTAGTGGATCGACTAGCACATTCCTCTGGTTTAGGACAAGACCAGATGGATGATAAGAAAGGCAGAAAATTTGTTTATCCAGAGCACCTCCCTCTTACGAAAATTCTATCAGGAATCAAAAGTGGAAAGTATCTTCAGGGTGTCTTTCATAGAAGTAGGGAAAACTACACTGAAGCTTATGTTTTTGTGCATGATGGAGATAAGCAGGTTTTTATTCAAAGTCTTATGCGTCTCAACCGTGCAGTTAATGAGGACATTGTTGCTGTGCAGATTTTACCAAAGAGTCAGTGGACTTGTCCATCATCAGTTGTCACCTTAACAGTGGCTGAAAatgatgatgatgatgatgaggaggatgaaaatgaggaGACAGAGTTGAATGGAGGGAACACAAACAAGGTTCTCTCAGGAAAAGTAGTTGGAATCATAAAGAGAAACTGGAGGCCATACTGTGGTGTCCTTTCTAAATCAGCAAGACCGCAGGGTACAAGGCACCTGTTCATAGCAGCTGAGAAAAGAATTCCCAGGATTGCTATCGAAACTAGACAAGCGTCAGCTTTGGAAGGGCAGAGAATTGTCGTTAGCATTGATTCTTGGCCtcaaacctctaaataccccgttGGTCACTTTGTGCGGAAACTTGGAGCCATTGGTGACAAAGAAACTGAAAATGAATTGTTGCTTCTGGAGCGAGATGTGCCACATTTACCATTCTCAGCTGCTGTGTTAAAGGACCTTCCCGTCATGCCATGGTCTATCACCGATGAGGACGTAAAGAGCCGTTTGGATCTTCGCCATATTGCAGTGTGCAGCATTGATCCGCCTGGATGCACGGATATTGATGATGCTCTGCACTGGAGAATGTTGGAAAATGGAAATTTTGAGGTTGGAGTGCATATTGCAGATGTGACGCATTTTATCAAACCAGGGACATCACTGGACGATGAGGCGTGGAACCGAGGCACTACAGTTTATCTCACGGACAAGCGAATTGACATGGTGCCGGGTCTTCTTAGTTCCGATCTTTGTTCTTTGAGGTCCAACGTCGACAGACTTGCCTTTTCCTGCATTTGGCAAATGACACCACAAGCTGAAATTGTCTCAACAACGTTTACAAAAAGTATTATCTGTTCGAGGATGTCCTTTATGTATGCTGAAGCTCAAATGCGAATTGATGATCCAAGCCAAACAGATGAGATCACTGTTAGCCTCAGGCATCTTAACCAGCTTGCAAAGATCTTGAAAGCAAAAAGAATCGAGCAGGGCGCTTTGACTCTTGCGTCTCCAGAAGTTCGCTTTCACATCGACAGCGAGACTCACGATCCAGTGGATCTTCAAACAAAGGAGCTGAAGGAAACGAATTCTCTCGTTGAAGAGTTCATGTTGCTGGCTAACATTTCTGTAGCAAAGAAAATCTTTCAACATTTTCCAGAGTTTGCTGTTCTTCGAAGACACCCGTCACCACCTCCCGCCAACTATGATGTCCTAGTGAAAGCTGCTCGCTCAAAGGGATTCGATCTTGAAGTGGATAGTGCGAAGTCCCTCGCGGTCTCTTTGGAATCCGCTCAAATCCCGGATGAGCCTTACTTCAACACCCTTCTTCGCATCCTGGCAACGCGTTGCATGATGCAAGCGGTTTATTTCTGTTCGGGTATGATCAAGGAAGAAGACTTTCTGCATTATGGTTTGGCAACTCCAATCTACACCCATTTTACTTCACCGATCAGAAGGTATTCTGATATCATGGTCCATCGCCTCCTGGCGGTGGCAATCGGCGCTTTAGATTCTTATCCAGATCTCTTAAATAAGAATAAGACACAGAAACTCTGCAATCATCTGAATATGCGTCATAAAATGGCACAATACGCTGCCCGGGACTCCATTGATTTACATTGCCAGCTGTTTTTTCAGAACAAAGCCATCGAAGAGGAGGAGGCATTCGTTCTGTTTGTGCGTAAGAATGCGCTGCAAGTTTTGATTCCAAAATATGGACTGGAGGGCACAGTATTAACGAGTAAAGATTCACCCACAGAAGTTGTCTTCAACGAAGAGGAACCTTCACTCAAAATTGGTGATGTCACCTATCGGCTGTTTGACCGAGTGCTGGTTAAAATCAATGTCAATACGTCTTCCACTGAAAACAAGTTTTTATCTTTCAGCTTGATGTCGAAAAAGGAAAACGAAGTTGAGCATCCAAAAGAGCCACTCCCCAAGAAAGCGAAGCGAAGCTAACGAGGAGAGAGAGAGGTTTCTTGACACTTCCCCTCCGCTCCGATCGCGATGACACGATCTTCATTTAAAAGGAGTTTTGTGTGACGAGACTGACCACATGTTCAACATCTTTGCAACGATTGGCTAAGGTGGCGAGATGTCAGCAACGACAACAGCAGCTACACCAAGAAAAGTGCTACGGGCAGCAAGTTAAAAGAGTTTGGGAACAGTGACACTGCAGTCACCCTCCATGAAAATCTTCTTTCTATTTCTTTGGTTCCCACCCTACAGCATTTTAAGCTCCCTGTAAATTTAAGTCACATTTGAATTTAGTGCTTTGTACAAGATAATCGTTTCGAGGTGATATGGATGATTTCGCTTGCGCCTCAATCATAAATGTTTGGACAATTAACGGGAACAAAAAACAGTTTTTAGAAACAAGAGACGCTTTATTATAAATATAAAATTGCAACAGTTAATCGTTTAAGTTTGTTTGAAATCTTGAAATTTATTTTACAGTTAACTTAAGATGTTTACTAGTACATATCGTACTAAAAAAATCGAAGACAGCGGGGTGTTTGTAGGAACGGTGAATATTTTCTGAACAAAACGATTCGTTTGGATTGTGGAAATGTAATCCTCTGCGCCAGACTCCTTAGTTTTGGCGTACCTCTTGTTTGACTTGGAAAAAAAATTCAGACTGTGTAACACTGCTAATTGTTTTTTTCCTCTTATTATAGCTTCTTTTTGTTCTCAGAAAACATTCCATAACCAGAGCAGATGTAAACAACAACGAATAAAACAAAAATGCCTTTCTTTACAACTGAACGGCTGATAAATTTGGTCCCCGGCTCAGTTCTTTTTCCTTTACTCGGCTCTTGCAGTCCAGAGAACCTGCAAACGCATTGTCGTACCATAATGTGgagattaagtaagcgacgttttttgagccagagatgacaagtggaaatcagctgttttccttatattggtaaatatctttttaccagtagagacgattagttcgacaatctgggatgcgaaattatcgcttctgatttcctcgagtggctcaaacacgtcgcttgcttaagctgtctaATCTAGTATGTTTCTTCTACCTTAATAAGGTCAATTAAATATATGTCATAATCTACTGCAAACCTTTAAAATAAAGGACAATTACCCTCCATGAGTTCGCCTCAAAAAGCTGACTCAAGGAAGCTGGAGAAGAAGCTGCGTACAGTTCTCTACATGCTAATTTAAAACTTGTTTCTGCTGAAATTCAACAAGGACTGGATGgttttcgtttcattttgttttgtttatttttCAACCAAACAAAGAATTTGGGTTTTGATAGCATTTCAGCCTCGTTCCGCTTTGGGACAAAGTGAAAATGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CSH3	Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4
Q9Y2L1	Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2
Q17632	Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans OX=6239 GN=dis-3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17216 all species →	Rrp44_CSD1	Rrp44-like cold shock domain	Domain	Interproscan
PF17215 all species →	Rrp44_S1	S1 domain	Domain	Interproscan
PF17849 all species →	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR033771 all species →	Domain	Rrp44-like cold shock domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR033770 all species →	Domain	Exosome complex exonuclease RRP44, S1 domain	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR041505 all species →	Domain	Dis3-like cold-shock domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000176 all species →	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000177 all species →	Cellular Component	cytoplasmic exosome (RNase complex)	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0016075 all species →	Biological Process	rRNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0265.g15.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.