Gene detail

Detailed information of amic_s0271.g21.t1 in Acropora microphthalma

Genomic Location: sc0000271_pilon:381743...384585
NR annotation: XP_044175409.1, uncharacterized protein LOC122958555 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0271.g21.t1

atgtctaagccaaagtttcaaacagaaatcgccaaagtccagggtgcgtttgaagctcttggcctgtccactgcaaagatccaagaaatcaggaatcaagtaaattttcccaccaggcatttgaatcagtgcttagaagaaatcaaagtccttaatgatcaattgctgagtgagatcacgctcttttgcattcttccgcccaagccttcgcacgatgttgtcgcgcgaaatattgaggtggctaagataactcaagagttgaaacaactaaaagagaccaacgagtgccgactaagctacctttacatctcaggaaatcctggaagtggcaaatctcagttggctggactcgtcgcagagcaaattttcagggaaaacacggatgaatttatatttgtgatgactttgaatgctgcgaaccttgacaggcttctagattcatatgtctcttttgctcgacatctcaagtgttcagagtatgccgttacaaatactctgaatgacaaagacctgaagacggaggagaagatcgcttacataaggtctttagctggtaccaaagtggagctttacgcgtcgtggctgttggtagttgacaatgtcgtccgcatacatgagatgcatgctcatttgccagacacaggaaacagctgctggagtaaaggtcaattgctgatcacatctcaggacaccaattacatcccttcagataacagtttcataaaaaaagtgtctgtaagcaaaggcatggcgccatctgacgccacctccttattggctgctatctccggtatcgctgacgatgagacagcgaaaaaagttgcacatgcattagattatcaacctcttgctttagcaagcgccagtacgtttgttaaacaactttgcgacagtaaaccatcatcgaacttgggctggagagactttctcgcgaaacttgacgaaggccaacttcaaaacactgagactttccttttaaacacaaatgcaagttatccgtactctatgaccactgcgattgcattagccgcggaaaagtcgatgttatccgacagagttctaaaacacgcattcaatattattgctctttgtgcgccacaaccattaaaccttgacattgtaaccaactacattcagaaggtcgaggagaatagcgatatgaacacagaaggcgaatttaacgacaaagatgtcattgttttgaggattcgcaagagctcgctcctgttacttgaagaagacaacggcgaaatctacgttcgcatacatcaagttgtaagagatgtcatccaacgtcttattcaacagcattgggagacgcaacgttttgaagtagtgcatgcgtccattttgtctttgacacaattcatagtagacaggaaaactgacgattatactgttcatggatttaggttagtagttcctcatttgagattcctttcaaagcaagttgaagctattttcaaggaaaatgactcatctaaagccatcaaaaacaagatttttaacttgaaagattatccagactattttaggcgttttgcccagatttgtcttgtacatttcgacctgaaagcagcaaaacgctttgcaagtttagctctaaagttaatttcccgcgatagtatgcttgatctctcgtatccagcaaacgcccattctctcatgggccaaatacttttccagatgggaacgtttgaagagggaaaacgtcacttcgaacgctctctcgctcttcagcttcaactgttagggtctgaacatcctgatgtcgcaacttcttataacaacttagcgattgtacttcatgatgaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcaagaaactttgggacctcaacatcgtgatgtcgcaagttcttataacaacttagctgctgtatttagtgatcaaggtgacttgaagcaagcaaaggagtattatgagcgtgctcttgctattaggcaacaaacgttggggcctcaacatccagatgtcgcaagttcttataacaacttagctgctgtacttcgtgatcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcaacaaactttggggcctcaacatcctgatctcgcaacttcttataacaacttagcgaatgtacttagtgaccaaggtcacctgaagcaagcaaatgagtataatgagcgtgctcttggtatttggcaacaaaccttggggcctcaacatccaaatgtcgcaaggtcttataacaacttagctgctgtacttcgaggtcaaggtgacgtgaagcaagcaaaggagtattatgagcgtgctcttgctattatgcaacaaactttggggcctcaacatcctgctgtcgcaacttcttattacaacttagcgaatgtacttagtgatcaaggtgagctgaagaaagcaaaggagtatcatgagcgtgctcttgctattaggcaacaaactttggggcctcaacatccaaatgtcgcaagttcttataacaacttagctgctgtatttagtgatcaaggtgacttgaagcaagcaaaggagtattatgagcgtgctcttgctattaggcaacaaactttggggcctcaacatccaaaatgtcggaagttcttataa

Transcript

amic_s0271.g21.t1

agtagtccagtcaaacgtagatgatctgagaaaattccgtaacgaagtctttgctcatgtgcctaaaggccagatgtctaagccaaagtttcaaacagaaatcgccaaagtccagggtgcgtttgaagctcttggcctgtccactgcaaagatccaagaaatcaggaatcaagtaaattttcccaccaggcatttgaatcagtgcttagaagaaatcaaagtccttaatgatcaattgctgagtgagatcacgctcttttgcattcttccgcccaagccttcgcacgatgttgtcgcgcgaaatattgaggtggctaagataactcaagagttgaaacaactaaaagagaccaacgagtgccgactaagctacctttacatctcaggaaatcctggaagtggcaaatctcagttggctggactcgtcgcagagcaaattttcagggaaaacacggatgaatttatatttgtgatgactttgaatgctgcgaaccttgacaggcttctagattcatatgtctcttttgctcgacatctcaagtgttcagagtatgccgttacaaatactctgaatgacaaagacctgaagacggaggagaagatcgcttacataaggtctttagctggtaccaaagtggagctttacgcgtcgtggctgttggtagttgacaatgtcgtccgcatacatgagatgcatgctcatttgccagacacaggaaacagctgctggagtaaaggtcaattgctgatcacatctcaggacaccaattacatcccttcagataacagtttcataaaaaaagtgtctgtaagcaaaggcatggcgccatctgacgccacctccttattggctgctatctccggtatcgctgacgatgagacagcgaaaaaagttgcacatgcattagattatcaacctcttgctttagcaagcgccagtacgtttgttaaacaactttgcgacagtaaaccatcatcgaacttgggctggagagactttctcgcgaaacttgacgaaggccaacttcaaaacactgagactttccttttaaacacaaatgcaagttatccgtactctatgaccactgcgattgcattagccgcggaaaagtcgatgttatccgacagagttctaaaacacgcattcaatattattgctctttgtgcgccacaaccattaaaccttgacattgtaaccaactacattcagaaggtcgaggagaatagcgatatgaacacagaaggcgaatttaacgacaaagatgtcattgttttgaggattcgcaagagctcgctcctgttacttgaagaagacaacggcgaaatctacgttcgcatacatcaagttgtaagagatgtcatccaacgtcttattcaacagcattgggagacgcaacgttttgaagtagtgcatgcgtccattttgtctttgacacaattcatagtagacaggaaaactgacgattatactgttcatggatttaggttagtagttcctcatttgagattcctttcaaagcaagttgaagctattttcaaggaaaatgactcatctaaagccatcaaaaacaagatttttaacttgaaagattatccagactattttaggcgttttgcccagatttgtcttgtacatttcgacctgaaagcagcaaaacgctttgcaagtttagctctaaagttaatttcccgcgatagtatgcttgatctctcgtatccagcaaacgcccattctctcatgggccaaatacttttccagatgggaacgtttgaagagggaaaacgtcacttcgaacgctctctcgctcttcagcttcaactgttagggtctgaacatcctgatgtcgcaacttcttataacaacttagcgattgtacttcatgatgaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcaagaaactttgggacctcaacatcgtgatgtcgcaagttcttataacaacttagctgctgtatttagtgatcaaggtgacttgaagcaagcaaaggagtattatgagcgtgctcttgctattaggcaacaaacgttggggcctcaacatccagatgtcgcaagttcttataacaacttagctgctgtacttcgtgatcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgctattaggcaacaaactttggggcctcaacatcctgatctcgcaacttcttataacaacttagcgaatgtacttagtgaccaaggtcacctgaagcaagcaaatgagtataatgagcgtgctcttggtatttggcaacaaaccttggggcctcaacatccaaatgtcgcaaggtcttataacaacttagctgctgtacttcgaggtcaaggtgacgtgaagcaagcaaaggagtattatgagcgtgctcttgctattatgcaacaaactttggggcctcaacatcctgctgtcgcaacttcttattacaacttagcgaatgtacttagtgatcaaggtgagctgaagaaagcaaaggagtatcatgagcgtgctcttgctattaggcaacaaactttggggcctcaacatccaaatgtcgcaagttcttataacaacttagctgctgtatttagtgatcaaggtgacttgaagcaagcaaaggagtattatgagcgtgctcttgctattaggcaacaaactttggggcctcaacatccaaaatgtcggaagttcttataacaacttagctgctgtacttcgtgctcaaggtgacctgaagcaagcaaaggagtatcatgagcgtgctcttgttattaggcaacaaattttgcgaccttag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26001	L1; Mastadenovirus pre-hexon-linking protein IIIa	-	Viral proteins	ko03200	deepkoala