Gene detail

Detailed information of amic_s0272.g11.t2 in Acropora microphthalma

Genomic Location: sc0000272_pilon:128268...141515
NR annotation: XP_029203930.2, uncharacterized protein LOC114967995 isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0272.g11.t2

CGCTATATGCGACTCACATCTGCTACAGGAAGAATATTTGCTTCAATGGTCTCTAATGATTGGCTGGAAATGCAACCATCCCAAGGAATGCCAAATGTCTACATGGATGATTTATGAAATTCTCAAGCCATAACCTGGTTCACTTAAATCCGGAGTGCACATGCGATATACGTTTTCGTCAGAGCATCTGTACATCAGCCATGAACAAGTCAGCCATGTTTGCGTATCTTTGTGCAGCCCTAGCACTTATGTCAGTGTCGAAGTGTCAGGGGATGAAGTCAAAACTAGTTGGAGGAGAAGAAGTCCTGGACACGAGGCAAAGAACTTCAGTGACAGTGAATTCAACTCTGCTACTAAGATGCGACAAGAAGGCAATTCATTTGACTCGGACTTCAGGCACAATCCGCTCTCCAAACTATCCTCATGGGTATGGCAAGGAGATGCGCTGTACATGGCATCTACAGATACCTCGAGGATTCCGGATCAAAGTCCGTTTTCGACGCCAATTTGATATCGAAAAATCACCAGGGTGTTCCAAGGATCACGTTATGCTCTCCACTACAAAACAATTTCGCAATCCACTCATTTACTGTGGTAACGTCAGGCCTCATGGGATCATAACACCGCTTAACTCTGTCTGGATACGATTTCATTCCGACAACACCACAAGCGGCAGAGGATTCTACATATCATATACTTCAATAGATGAAAATGAATGCAAGCGTGCTGTTTGTACGTTTCCGAGCCTGTGCAGAAACACTGTTGGCAGTTATGCTTGTGATTGTCCTGACGGATATGCTAATAGGGGACGCAAAGAATCGACGCGATGTGAAGACATCGATGAGTGCAGGATAGCAAATGGCCGCTGTGATCACAAATGCATAAACACGGATGGAGGCTATTACTGTATGTGCAGGAGAGGCTATAAACAAGCAGCTGATGGAAGAAGATGTAGAGATCAAAATGAATGTAGCAGCAACAATGCAGGTTGTTCTCATATCTGTATCAATTCCCGAGCAACTTATCGCTGTGCTTGTCCCCCAGGATTTGCCCTTCATTCCAATAAAAAGACTTGTTATCCAGTTATTTCATTTAACCGTGATCAATACACAGTTGGACTGAGTGAAAATTCAAGAATTGACACTGTGGTTACAAAAGTGGAGGCTAACACTTTTCCTTTACGACATGTCATCACCTATCAACTGCTGTCAGAGAATCTTTGGACACCTTCGTTGTTTGCGATCAACCCTAGAACTGGTGAAATTGTGTTGAAAGGCAGGCTTGACAGGAGGCAAAAAGACACTTTTCTTCTTCAAGTTCAAGCTAGCTTTCAAGTCTCAAATGTTTCTAATGGCAGTCAATATAGATCGGCCAAGTCTTTTGTGCTTATTAATGTTCGTAAACATCAGAGCGGAGGACATCTTGCCTTCTCTCATACATCATACAGCCTAAAGGTTCCTTGCAACACATCACAAGATACAGTTATATACCGTATGCACATTGCCAACTCGAACGGCCTTGGAAACTCTCGACTAAGATACAGGTTTCAAAAGAGATTGGATTATTTTTTCATCACGCATCACGGAAAAATAAAGATCCAAAGGAGTCTGTTACTCTTATGTTATCTTACTCCTCCCAAGTCCTTCAAATCAACTATTTTTGTGCGGGACACTGGAACTACAAAACGTAATGCGTATGCCTCGATCACCATCACTGTCACGCCACCAGGATATCTAGCTAAGGAAACCGCTGGCGTAGCACGTCAATTGAGAGGCACCATTATTCGTCTCCGAACTTCTCATTCCGATCCAAAAACGGAAAGACGTAGATAAAAGAGTGCCAAGAAACGCCAAAAGAAAATTAAAAATCAAGCAAGTGGATACATCTAAAAAGAAAGCAGAATTTTTAAAGCCATTTCTTAGTAAAAGAATACAAGATTGTTGATTTAATAGATCTAAAATTTTTCGCATGTTCTGGATCGACTGCGATGAAATTGTTTATTATATATAGTTGAGCTACTGGTCGAGGTAGAACATGTGTGCATTTTCCGTTTACAACCCAGATTGTTGCTTTTGAGTGAGGAACTTTTAACTATTCAATACTTCCCTCGGTTCCCTACATAACCCAGCATTTGCTTGGACGAAAAGCCAAGGAATGGGGACGAACTGCTAGGTGTCTTTATAAGGAAAAGGACGCGGAATGCAAAGTACGTCATCATTGCTGGGAGTCGTATGCGATCAAGAAAAAGATTGTTCAGTACTGTTGCAGCGAAAGCGATCCTGATAACAAAATCTTTGACGTGCATATCCAAACTCCGAGCGCAGCCAACAAGTTTGTATGCATCTAAAACGCACCGAGCAAGGGCGTTTAAAGAAAGAAAGGGAGAGAAAATACAATATGAAGCAATGCATGAGTCAAAGAAAGCGGAGATCTGCTTCCCGCTGTTTGTGACATTTTCTCAACCCATGACTGAACTGTGATACCATTTGAGGTCTCACTTAACTGTAAATAAACTAGAAATCAAGGAACAATTACCCAAGAAGACTCTTTTGAAATTAAATTAAGTTATTGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57460	Dorsal-ventral patterning tolloid-like protein 1 OS=Danio rerio OX=7955 GN=tll1 PE=2 SV=1
Q9DER7	Tolloid-like protein 1 OS=Gallus gallus OX=9031 GN=TLL1 PE=2 SV=1
O43897	Tolloid-like protein 1 OS=Homo sapiens OX=9606 GN=TLL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR052080 all species →	Family	von Willebrand factor C/EGF & Fibrillin	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47333 all species →	VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0272.g11.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.