Gene detail

Detailed information of amic_s0276.g22.t1 in Acropora microphthalma

Genomic Location: sc0000276_pilon:238396...248445
NR annotation: XP_015747288.1, PREDICTED: uncharacterized protein LOC107327050 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0276.g22.t1

CTTTCGGTCAATAATAATTTACCACAAATGAATGAAATTCAAAGCCGAGTCCCGACATGTGCTCTTTGATTTTTTTCTTTTGTTGCCTTTGCTTTAGAGGGGGCTTTAATAATTACGATAAATAATTATCCAGCAGCTGTTATTAGTTATCTTCAAACCTTATTGGTCGCGGTCATCAAATTCCTGATAAACTATTGGCGGATTGAAATTATCGCTTATCAAATTTCAATAGGGTACCTCCATATTGAATGTTTATCCATTATATTGCTTTTGAAATATTAGTGGATCAGTAATGTTCTGGATTTTCTTGGTGGGTCGAATTTGTCGTTGATCGAGAAGAAAAAAACGTAGAAGATGGAAACTGAAGAAGGATGCGTTCATTTCAACTGCTCTGTTCACTATCCAAGTTTCACGGAAGAAGGCGTAGAGGTACAAACTATGGCGCGGGGAGACGGCATCGAGTTACAGCCCAGCACCCGATTATCAAGCCTCGCTGCAAATGTTTTGAGCGAAATGTTTCAGAAACAAGAGATCGATGGTAAAGTGATCATGAAGGCAGACAACGCCAAAGTTTTCATTCAAGTGCGCGATAACTGGAAACCTCACCCATTGGCAGATTTCACAAAAGGAGGGGATTTGGAAGTAACCATACATGAAGCATTTGGAGATGTCCTGTTTGTGAAGGATTCATCTATCAGTATTCACGTCCACCTTTGCTATGATAAAGACTGGGATGATCAGAAAGTTAAGACTGCTATCAAAAAGCTGCTGGAGCACTACAGTCAAACTCATCTAGAAAGGATGCTGTGTCCATTTTCGCAGGGCATGTTATCGCAGATATCGAGAGATCAATATCCTTGTCGTCTGTCGTCTGAGAAGATCAAGCTATTTGCCGCGTGGTATGAGCACTCTCAATTGAGCAAAGAACAGGAGGAAGACGGCTCAATGTCACCGGGAAGAAAGCTTTTGATTACTCCACGAGGAAAGAAGATTGTTTTCAATACTACAGTGGAAATTCCTTTGTTAAGGAAATGGTATGAAGAGACTCCTAAACCCGATATGAAAGATTTGACCAGATACGCGGAAATCCTGAACAATTTGGAAGAGCGAAAAAACAGAGAACAAGTGCTGGCTCGCCATGTCAACACTTGGTTTAAGAACGAGAGAGCCCGACTAAGAAGAGAGGGTCTTCTGGAGGACTTGTCAAGGCCTTCCATGGCCGTGACAAGTTCATAATTCACCTCGAACTCCCGGAAAACCCGGCGTTTCTCAAGAGCACTATACCTTTGGCGCGCTTGGTCAGGGTTTTTACTGCCCTTAACTGATATTTGACGAAGTGACCACAATGAGAATACTGAGGGGGAATTCTAGTAATTATGCAATGCGTAGTTGCATAGTGTGTGCAGAATAACTATTAATTTACCCACACAAAATGGCAAAAACTATATCTGATTAGCTTTAATCCCAGAATGTTTAAGGTTGAGAATTAACATACCTGGAAATTTCCAAATTTTTGATTTATTCTAATTACCTTTGATTTGCATATTTTTGTTGAAGTGAGTCATGTTGTCCCAAGAGCGAACTTGGGAAGGGAAATGAAACCTGTTTTCAAGCATTTCTTTGATATATCTTTTACGCCAATAGCCGTTTTTTCGTTGAGAAAGTAGTTTTGTTTTATGCATGAGAAGAAAAAGAGAAAGAAAGGGTGGGAGATAGCAGGAAATTTCAAAGAGGTTTATTTGTATAATGCGCCTCTTTTCTGGCAAGACGGGAAAATGCACCTTATGAGGAAGAGCCGTGTATAGAAATGACGAGCCCAAGACAATCCGCTGTTAATACCGTAGACATTTCCCGATAATAGCTATGAAGTGAAGGTTGCATTTGTAGATTTATGGGAGAGGCATTTTTTTAAATGTGTGATGAATGCAGCGTTTGTCTTGGCTGGCGGGTCATGAATTATTAATGCACTTGCAAGCATTTTTCACCACAAGTAACATCTGTTTGCAAAAGAGGAAATGTGGCGGTGACCCACTGTTCTTTCTTGTCCTAATATTTAATTGGAGATGAAAATTATTTATTTATTTGTAAGTATGCGGATTAAACTTGATTTTCATTAAAATTGGAGCCCTTTTCTACATGGTACGATTTTTAAGTGATGTGAAGTTATGGTAGTACAATTATTTGCTTTTAAATGTCTTCGGAAATTCGTCGATTTATAAATATTGCATTAAAATTTGAAATATGGT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008411 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for amic_s0276.g22.t1 in Acropora microphthalma.

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR039673 all species →	Family	DNA-binding protein SATB1/SATB2	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR038216 all species →	Homologous_superfamily	SATB, CUTL domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15116 all species →	DNA-BINDING PROTEIN SATB FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0276.g22.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.