Gene detail

Detailed information of amic_s0284.g4.t2 in Acropora microphthalma

Genomic Location: sc0000284_pilon:22457...47135
NR annotation: XP_029193548.2, LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0284.g4.t2

ATGGCGGATGCTGGGTTCTTTCGAGGCACAAGTGCGGAACAAGACAACAGGTTTCTCGACAAGCAGAAGAAGTTATTGAAATCCATGCGTTTTGATGATGTCCTGAATAAGAAGGTTGACATGGATAAGGTGAATCTGGATGTAATAAAGCCATGGATTACAAAGAAGCTGATTGAAATTCTTGGTGTCGAGGATGATGTGGTCATGCAATATGTTTTGAATATGCTGGAGTCTGAAAAGAATCCAGATCCAAGATCTATGCAGATAAATATAACTGGATTTCTTCAAAGTAAGAATGCGAGAGAGTTTATGAAAGAGTTGTGGACCTTGCTTGTCAGTGCTCAAGAAAACATTGGAGGCATTCCTTCTTCATTGTTAGAAAAGAAGAAAGAAGAAATCAAGCAACGAAAGCTGGAGCAAGAACGTATTCAAGCTAACCTTCAGAAATACCATGGAGATCAACAACAAACTGAACCAGACAGCACAGCCACTGATGACAATGTTGCAAGTGAAAGTGCATCTGCTCCTGGATCACATGACATCTCTGAAGAAATTAGAAAGGCTAAGGAAGTGGCTCAGTCGCTAGCCGGGAAAGAACAAAAGGAGATTGAAGAAACTGAGACAACAAAAAAAGAATCTGCCAGCGAAAAGGAAGTCAAAACGGAGATACGTGCAGGATTGCATCCaaataagcgtcacgaagtgtcccctcacccttctcctaaacttcactatcacatctggggcccgttctcgaaaGAACGTTCCAGCTCTCGTTCAAGGTCAAGGTCTCGCTCAGTTGAGAAAGATTCAAAGCGACCACGTGATAAGAGAGGGCGCAGGCGTAGCAGGTCCAAGTCCTCTGTTTCGCGTTCACGATCCCGATCGTTCTCATCGTCAAGATCCCGCAGTCGAGAAAGACGAAGACGGTCTCGCTCGCCCCGTCGAGTGTCGTCGTACAATAGAAACCGTTGGTCGCCGTACAGACGCCGTAGGACTCCATCCCCTAGAAGATGGACTCCGCCCAGACGAAGGTCGCCCCCCAGACGAAGATCTCTCTCCCCGCGCCGAAAGCCGCGCCGTTCACCATCTCCTCGCCGTTCACCATCCCCTCGCCGGCGGTCACGCTCGGTGTCAGCATCGTCACGTTCACGGTCGCGATCACGTTCTGCTAGCTTTAGTTCCCGTTCATCACACTCTCGATTGGGTTCCGTCGAaaaggagaagaaaaacaaagaaaaggacaaggacaaagacgtcaagaaagagaaagaggatgtTAAAGAGGCGGAAAAAGAAACAACTGTAAGTCAAGAGAAAGGTAAAGAAGCGGACTTGTCCCCAGCCCCTCCTCCGACACACCATCGTTCAACTTACAAGAAGCAAGAGCAACAACAGTCGCCAGTCAAGCAGCCTTCACCGTCATCCTCTTCGTCATCTCCCTCACCTACTCCACCCCCAGAGAAACAAGAAAAGGAGGAAAAAGAGAGGTCGCCACCTGTCCCCAAGTCAAAGAAGACAACAAGTCGCCGCTACAGGAAACATTCCCCTTCGCCATCATCTGAAGAAGAGGAGTGGTCACCCGAAAGAAGGTTAACTGATGCCTCCAAAGATCGCAAGAAAGAAAAGGAAAGAAGTGATTCACCCCATGAGAGGAGACGAAAACGGAGGGATTCCTCTCCGTCCCCTCGGGGAAAGCGCCGTAATTCGTCTTCATCCCCTAGAAGGAAGAGAAGGGAAGTCTCGCGTTCCCCTTCTCCGAGGCGAAAACGAAGGGAGCATTCTCGGTCGCCATCACCTATTCGAAGACGCTATCAAGAAGCGCGCTCCCCTCCCAGAAGGAGACGAAAATCAGATTATTCCCCATCACCTCCTCCCAAGGAAAGGCGCCGACTCCCGGACCCCTCCCCTCCTCGCAACAGAGAGCGGCGAAAGGAAAGAAGATCCCCATCTCCCCCACCACGCAGGCGCCAGCGATCCAGCTCCTCGCCTCCAGCTATTCGTCGGGTAGAGTCGTCACCTCCTTCGGGACGTCGTCGTCGTCCTGTCGACCGGTCTCGGTCGGAGGATAAAGCATCAAGAGAGCGACGTCGATCGCCGGAGCCCGACAAGGAAGCAGGAAGGAGGCGGAAGCTGTCTGAACGGTCACAATCTCAGTCATCTTCTGTCTCCCCTGAGCCTCCGAAGAAACCCCTGGAAGACTCCACGTCTTTAAAGAAGAGTAAATCACGTCAAGTCAGTCGTCCCTCGTCCTCTTCCGCTTCCCCTGAACCAACATCCGCCAAGAAGAGATCGCGCGAGACTCAGGAATCTCCTCGAAGGAGTCCTCCCAAGGAGGTTTTGACGGACAAAGGGGAAGGAAAGAGGCGATCACAGTCGGCGGCTTCGCCCGCGGTCGATTCACGGGATCGCAGACGGGAAGAACGTAAATCAGCGTCCAGGTCACCAGAGGGACGTAAAAATCGAAGATCAGCTCAAGTTTCATCGGCTTCACCCGCCGTCAAAGCGAAGTCTCGCGCCAAACGATCGGCTTCAGGTTCGCCACCACCGCCTCCCAAAGCGCCGAGGTCACGAGGATCAAAACGGTCACCACTTTCATCCCCTGAAGGTGACAACAAATCCAGGTCCCGCGCTAGCAAACAGTCACCGTCTCCTTTACCAGACAACCGCCAGCAGTCACGCGCGGTTAAGGAGAGTCCCTCTGAAAGTCCTCGTGAACGATCTAAGCGTAAGGCCGCGGTTAAGAGGTCCTCGAGTGAAGATAAATCGACAGAGCCCCCGCCAAGGAAGGCCCGTCGAAGCGAAGAAGAGGAAGCACCTGAGAAATCTCCAATCCCGTCTCCTCCAACTAAGGAAAGCTCCAACGAGGAACaagaaaagacagaagagaaagaacccaagggagaaaagaagaagaaacataagaaacacaagaaaCATGGTGGATCcaaacacaaacacaagcgttcaaaacacaaaaagcgtaaggacaaagacaaatcacCAGCGCAATCTGAAACTATGGATGAGGACGACACAGGGGAAACCTTGGAGAAAAAGCTCCGAGAAAAAGCCTTGCAATCTATGCAGAGACATAACAAATCACCGGATGCGCAACCTGAGCCAGTTGACGACTGA

Transcript

amic_s0284.g4.t2

GACCAAGCGACTTTCAACATGGCGGATGCTGGGTTCTTTCGAGGCACAAGTGCGGAACAAGACAACAGGTTTCTCGACAAGCAGAAGAAGTTATTGAAATCCATGCGTTTTGATGATGTCCTGAATAAGAAGGTTGACATGGATAAGGTGAATCTGGATGTAATAAAGCCATGGATTACAAAGAAGCTGATTGAAATTCTTGGTGTCGAGGATGATGTGGTCATGCAATATGTTTTGAATATGCTGGAGTCTGAAAAGAATCCAGATCCAAGATCTATGCAGATAAATATAACTGGATTTCTTCAAAGTAAGAATGCGAGAGAGTTTATGAAAGAGTTGTGGACCTTGCTTGTCAGTGCTCAAGAAAACATTGGAGGCATTCCTTCTTCATTGTTAGAAAAGAAGAAAGAAGAAATCAAGCAACGAAAGCTGGAGCAAGAACGTATTCAAGCTAACCTTCAGAAATACCATGGAGATCAACAACAAACTGAACCAGACAGCACAGCCACTGATGACAATGTTGCAAGTGAAAGTGCATCTGCTCCTGGATCACATGACATCTCTGAAGAAATTAGAAAGGCTAAGGAAGTGGCTCAGTCGCTAGCCGGGAAAGAACAAAAGGAGATTGAAGAAACTGAGACAACAAAAAAAGAATCTGCCAGCGAAAAGGAAGTCAAAACGGAGATACGTGCAGGATTGCATCCaaataagcgtcacgaagtgtcccctcacccttctcctaaacttcactatcacatctggggcccgttctcgaaaGAACGTTCCAGCTCTCGTTCAAGGTCAAGGTCTCGCTCAGTTGAGAAAGATTCAAAGCGACCACGTGATAAGAGAGGGCGCAGGCGTAGCAGGTCCAAGTCCTCTGTTTCGCGTTCACGATCCCGATCGTTCTCATCGTCAAGATCCCGCAGTCGAGAAAGACGAAGACGGTCTCGCTCGCCCCGTCGAGTGTCGTCGTACAATAGAAACCGTTGGTCGCCGTACAGACGCCGTAGGACTCCATCCCCTAGAAGATGGACTCCGCCCAGACGAAGGTCGCCCCCCAGACGAAGATCTCTCTCCCCGCGCCGAAAGCCGCGCCGTTCACCATCTCCTCGCCGTTCACCATCCCCTCGCCGGCGGTCACGCTCGGTGTCAGCATCGTCACGTTCACGGTCGCGATCACGTTCTGCTAGCTTTAGTTCCCGTTCATCACACTCTCGATTGGGTTCCGTCGAaaaggagaagaaaaacaaagaaaaggacaaggacaaagacgtcaagaaagagaaagaggatgtTAAAGAGGCGGAAAAAGAAACAACTGTAAGTCAAGAGAAAGGTAAAGAAGCGGACTTGTCCCCAGCCCCTCCTCCGACACACCATCGTTCAACTTACAAGAAGCAAGAGCAACAACAGTCGCCAGTCAAGCAGCCTTCACCGTCATCCTCTTCGTCATCTCCCTCACCTACTCCACCCCCAGAGAAACAAGAAAAGGAGGAAAAAGAGAGGTCGCCACCTGTCCCCAAGTCAAAGAAGACAACAAGTCGCCGCTACAGGAAACATTCCCCTTCGCCATCATCTGAAGAAGAGGAGTGGTCACCCGAAAGAAGGTTAACTGATGCCTCCAAAGATCGCAAGAAAGAAAAGGAAAGAAGTGATTCACCCCATGAGAGGAGACGAAAACGGAGGGATTCCTCTCCGTCCCCTCGGGGAAAGCGCCGTAATTCGTCTTCATCCCCTAGAAGGAAGAGAAGGGAAGTCTCGCGTTCCCCTTCTCCGAGGCGAAAACGAAGGGAGCATTCTCGGTCGCCATCACCTATTCGAAGACGCTATCAAGAAGCGCGCTCCCCTCCCAGAAGGAGACGAAAATCAGATTATTCCCCATCACCTCCTCCCAAGGAAAGGCGCCGACTCCCGGACCCCTCCCCTCCTCGCAACAGAGAGCGGCGAAAGGAAAGAAGATCCCCATCTCCCCCACCACGCAGGCGCCAGCGATCCAGCTCCTCGCCTCCAGCTATTCGTCGGGTAGAGTCGTCACCTCCTTCGGGACGTCGTCGTCGTCCTGTCGACCGGTCTCGGTCGGAGGATAAAGCATCAAGAGAGCGACGTCGATCGCCGGAGCCCGACAAGGAAGCAGGAAGGAGGCGGAAGCTGTCTGAACGGTCACAATCTCAGTCATCTTCTGTCTCCCCTGAGCCTCCGAAGAAACCCCTGGAAGACTCCACGTCTTTAAAGAAGAGTAAATCACGTCAAGTCAGTCGTCCCTCGTCCTCTTCCGCTTCCCCTGAACCAACATCCGCCAAGAAGAGATCGCGCGAGACTCAGGAATCTCCTCGAAGGAGTCCTCCCAAGGAGGTTTTGACGGACAAAGGGGAAGGAAAGAGGCGATCACAGTCGGCGGCTTCGCCCGCGGTCGATTCACGGGATCGCAGACGGGAAGAACGTAAATCAGCGTCCAGGTCACCAGAGGGACGTAAAAATCGAAGATCAGCTCAAGTTTCATCGGCTTCACCCGCCGTCAAAGCGAAGTCTCGCGCCAAACGATCGGCTTCAGGTTCGCCACCACCGCCTCCCAAAGCGCCGAGGTCACGAGGATCAAAACGGTCACCACTTTCATCCCCTGAAGGTGACAACAAATCCAGGTCCCGCGCTAGCAAACAGTCACCGTCTCCTTTACCAGACAACCGCCAGCAGTCACGCGCGGTTAAGGAGAGTCCCTCTGAAAGTCCTCGTGAACGATCTAAGCGTAAGGCCGCGGTTAAGAGGTCCTCGAGTGAAGATAAATCGACAGAGCCCCCGCCAAGGAAGGCCCGTCGAAGCGAAGAAGAGGAAGCACCTGAGAAATCTCCAATCCCGTCTCCTCCAACTAAGGAAAGCTCCAACGAGGAACaagaaaagacagaagagaaagaacccaagggagaaaagaagaagaaacataagaaacacaagaaaCATGGTGGATCcaaacacaaacacaagcgttcaaaacacaaaaagcgtaaggacaaagacaaatcacCAGCGCAATCTGAAACTATGGATGAGGACGACACAGGGGAAACCTTGGAGAAAAAGCTCCGAGAAAAAGCCTTGCAATCTATGCAGAGACATAACAAATCACCGGATGCGCAACCTGAGCCAGTTGACGACTGAAGATTGTCAAACGACCTTTTGTTGTCTTGTCTAACCTTGGTTATGCTGCTCTCTCACGCTCTCTTACCTGCCTTATTTTGCTTGGAAAATTTGTATCAGAAAGCGTGCTTCTGAAAGGGAAGAAGTGATAAAAGATTGTTAAGTTAAAGGCGAGCGTACTGCAAATAGTTTTCAGATTCGACTGCATGTAGACGAACGGGTAGAATACATGCATAGGCGCGAGGCTCGGATGGCATCCTCCCAGTCTCGCCCCTGTATTTGAAATGAGAAATTAGATACCTCGCAACACAGGCAAGTAGAGACAGCTTAGCTTGAATTCCCGCAGTGGCGTTTCGTAGGCTATTAGCGTTGTTTTGCGATCCGTATTGCTAGTGTGCTCTCTTGGAAGAAAAAGTCGCTGATACCACGGCACAAATTAGCGACCTAGTCGCTTTCTGACCCAGTGAATAAGTGCATACTTTGCGTCGTTCAGATTCTCCTTCTTACTGCAGGTAATTCTCAGATATGCATCCTCGCAGGCGTTTGAGTGCATAATACAAAGCGCAGCGCGTGCGCGGACTCTGAGTGTGTTCTCTCGCACTGATTTCTCATTTCATCAGTTGTGGTACGTTTTCATAAAGCATTATTTGTTTTGTAGGATTTGTTTGTAATTTTACTTCGAAAAATTTGTTTTACTTCAGGTTCTGCTTTAAAATCTTGCACTGGGGACGAACCCGACTTCGAAACCAGATCATAATGTGTGTCGATGACGTATGTTCCCCTCGCGCAAGGAAGCCCTTTAAATATCGGTCAACGCGCTTCTTGCAGGGCACCATTCGTCTTCCGCTTTAATCGCTTAGAAAACTGGACTAGGTCGTGTTTAGTTTATCCATACCAGCAATAACACCAGGCTTTCTTTTTCCATTAGATTCCATATCATTAGGAGTTCAGGTATTTTAATATTATATCTTCCGATTTTATCATTTGAAAAAATGTAATAAAGTGTTTCCGCCAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52KI8	Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE=1 SV=2
Q5ZMJ9	Serine/arginine repetitive matrix protein 1 OS=Gallus gallus OX=9031 GN=SRRM1 PE=2 SV=1
Q8IYB3	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001370 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480 all species →	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052225 all species →	Family	Serine/arginine repetitive matrix	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR036483 all species →	Homologous_superfamily	PWI domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23148 all species →	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13171	SRRM1, SRM160; serine/arginine repetitive matrix protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.