Gene detail

Detailed information of amic_s0286.g1.t1 in Acropora microphthalma

Genomic Location: sc0000286_pilon:1...8774
NR annotation: CAH3172846.1, unnamed protein product, partial [Porites lobata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0286.g1.t1

ATGGCTCCAGACTACGACCATTTGACACTAATGCAGAAAGTTGAAGTGTTCGAGCATGCGCTGTCTAACACGAATGGCGACGACCTTGCCAAACTGCTGTGGCTCAAAAGCCCAAGCTCGGAGGTCTGGTTTGATCGGCGGACTAACTACACGAGATCGCTGGCTGTTATGTCCATGGTGGGATACGTTCTCGGATTGGGAGACAGGCATCCCTCGAACCTGATGTTGAATCGTTTGAGCGGGAAGATTTGTCATATTGATTTTGGTGATTGTTTTGAGGTTGCAATGACAAGGGAAAAGTTCCCAGAAAAGATTCCTTTCAGACTAACGAGGATGTTGACTAATGCTATGGAGGTGAAAGCCTCTATGACAAGAAACAAAACTTACGGAGCGAAAGTTAGACTTAAAAAGAACACGGCTGAAGTGGATGGGGCTTACTGTAATTGTAAAGCTGGAGCAAATGGCTATTGCAAGCACGTAGGGGCTGTGCTTTACACAATTCTTGACTTTGTTGAGAGTGGCTTTGAGGAGATTCCACCCAACAAGTCATGTACAGAGAAACCTCAGGAGTGGCACAAACCACGAACACGAACCCCCAAGAATGCACCCGTTCGTTTCAGTGACATTCTCATCATCCATCATGATGATGCAGACAAAAATAACAAAACGGACAAGAGAATACAAAGAAAAAGAGAAAAACTGGCATACACCGCTTGTCCTTCTTATGCCTTGAAAGTGACAAGTGACCAGATTTATTCATTTTGTTGTGACTTAAAAGCAAATTCTGATAAATCAAAACCAATGTTAGTAGATGTACTTCAGGGAAATAATTACGAACCTGTTATTGTTGAAGATCTTGAAAATAAGTTCACCAAATGCTTGGTTGCTATGGATCACGACTATTTGACAGGGAAGCGAAAAACTTGCCTTGAAATTCAGGCAAGCATACCAACGGAAGTGCAATATCCTTCACCTTGTAAGAAGCGAAAACTTGACTTGATTGAAGGGAATGAATGTGAACCCTTGGACAGTAATTTCTCAAATGATTCACACCTTCTCATTTCACATTCTGTTTTGATAACCCCAGAGGACAACCCACGTGGTAACCAAGAAAAACAATTTGAAGCAGATTGCCAGGAACAGCCTACAACAAAAACTACTAATGAAGCATTACAAACTGTAAAAAATGGAAATACTAATCTTGTGGAAATAACTTATAAAGGTCAAGTCATCTCTGATGAATGCGACTTATCAAATCCTAGGTTCAAGGAAGAGTGTCAAGATTTTCTTAGTCAAATTAAAATCAACTATTCTGAGGCTATTGATGTTGAGGAGAGGACAAGGGGACAATCATCCAACCCAGAATGGTTTAAATATAGGACTGGAAGAATCACAGCATCAAAGTTTGGTGAAATCAACAATCGCAGGTCAACAACTGCACCAGATCGCCTTGTCAGAGATCTATTTCAATACAAAAAAAGGACAACCACACCATTTCAGTGTGCTGAAGGACTCAGACTTGAACCAGTGATTAAGGACAAATATGTTGAATATCAGCTCAACCATGGCCACTTGGGGCTGTGCGTTGAAGAGAAGGGTGTTGTTATTGACCAGGACAATGCATTTTTGGCAGCAAGTGTTGATGGTGAAGTACATGACCCCAGCAACACAGGCAGTCCAGTTGGAAACCTAGAGATGAAGTACAAGTTATTTCCAGAGAAGGGTGATCCTGAAAACAACACCAGATTATTAGTTACCCTTGCAACTAAATCCAAGAATTTTTGTTTAGAATTAACTGATTCTGGCCTCAGACTGAAGAGGAAACATCCCTACTATTCAAAAGTGCAAGGAGGGATGGCTATAAGAAGAATGCAATGGTGTGACTTTGTAGTTTATACCTATACCTCAGCAGCAGAAGACATCCATGTTGAGCGGATATACTTTGATCCAACCTTTTGGGTTGCCTTAAAAGGCAAACTTGTTGACTTTTATTTGTTTGCTATGATCCCAGAACTTTTGACAACACGTGTGAAAAGGGGTATTCCCTTGTACCCTAATATCTTTACTTACAAATAA

Transcript

amic_s0286.g1.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42345	Serine/threonine-protein kinase mTOR OS=Homo sapiens OX=9606 GN=MTOR PE=1 SV=1
Q9JLN9	Serine/threonine-protein kinase mTOR OS=Mus musculus OX=10090 GN=Mtor PE=1 SV=2
P42346	Serine/threonine-protein kinase mTOR OS=Rattus norvegicus OX=10116 GN=Mtor PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003946 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01771 all species →	Viral_alk_exo	Viral alkaline exonuclease	Family	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan
PF04434 all species →	SWIM	SWIM zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR034720 all species →	Family	Viral alkaline exonuclease	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR018936 all species →	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0016242 all species →	Biological Process	negative regulation of macroautophagy	Interproscan
GO:0031929 all species →	Biological Process	TOR signaling	Interproscan
GO:0031931 all species →	Cellular Component	TORC1 complex	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0286.g1.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.