Gene detail

Detailed information of amic_s0287.g4.t1 in Acropora microphthalma

Genomic Location: sc0000287_pilon:36766...63084
NR annotation: XP_044164183.1, calcium homeostasis endoplasmic reticulum protein-like isoform X4 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0287.g4.t1

ATGACCAAAGAAAAACAGAAAGGAAATCCAAAATTTGCATTTCTGTTCAGTGGAGAGTACTATAACTATTACAGATGGAAAGTTTCTTTTGAAATAGCCCAACAGCAAACTCAACAACATCTCCAAAGCCAACAACAGCTTGTGCAACAAGCAGCGGCACAATATGGAACCAATCCCCAAGCTCATTTGGTACAGCAGGCTATTGTCCAGCAGTCGATTAATTCAGCACCATGGCAACATGCTCAGCAGCAAGCTCAGCAACAGATGCAAGTACTTCAACAGCAACAGGCTCAAGTAGCAAATGTTCCCCTGTACCCAACCCCTGCAGCTCCTGTCCAACAAGCTGCTGATGTCGATATTACAGAATTAGAAAGCCTACTCTGCAAAATTATGGAATCGTGTACCAAGGATTCCATATCAAGTGGCAAAAATTATATCTTCTCCAATGCCAAGACTCCTGTGCAATGTCATCAGACCTCCCAGTATCTACTCAAGAGGGCCCTAGGTCCTGGCATGCAGTTTCAACACAAGCTTCACATCGTCTATCTCATCAATGACATTCTTCATCATTGTCAGAGAAAAGGAGCGCAGGACCTGCAGGAAGCTTTGAATAATATAGTAGTCCCTGTGTTCTTTGCCACACAACTGGGAGAATCTGCCGAAAATCTGCAGAAGATCAACAAAGTATTGGGTATCTGGGAAAGTCACAATTTATTTGAGCCATCTCTGCTACAGAAACTGAAAAATTCTGAAAATGCACAGAGTGCTGTGGATGCTGCTCGACATCAAGTTTTTGGTACTCAAGAGAGTTCCGCAGGTCAGAACTTGGAAGCACCTGCACAAGAAAATGTTGATGAACAAATAGACGCGGAAAAGGAAAAGATCACTGAAGACGAGAAAACGGGAGCCAGTGAAGCAGACAAGAGGCATATATTAATGCATACAATTGAGCCCGGATCCTCAGCAAGACCGCCGCCCTTCCATGGTCCACCACAGCAGTTTGATTATCAGCAACAGGAATATGAGCAATATACCGAACGCGGTCCACCGCCTCCCCCTGTCATGGCCAACGAGTTCAACCGTGGGAGACCGGAGAAAGAAGAAGATTTTACCGTTGATGAGTATGATATACCTCCCGACCCACCCGTCCCCGAGCCTATTATACCTTCAGCGATGTACTATGAACTTCCTGCTGGCCTTATGGCGCCATTAGTCGGGTTACCAGACGTGGAATACAAACCCTTAGATCCCGCAGCCCTTCGCCTTCCTGCACCGCAGCCACCAAGTGAAAGACTGTTGGCTGCAGTTGAAGCGTTTTACAGTCCACCCAGCCACGAGAGACCGAGGAACAGTGAAGGATGGGAGCAAAGTGGTCTTTTTGAGTTTTACAAAGCTAAGTTGAAGTACATCAAGGACCGTGAAGAAGCAGAAAAACTCAAAGTGCACGAAGTACAACCAAGCAGATCAAGATCAAGGTCTCGTTCCAGATCTCCTCGCCGTTCGCGATCTCGTTCCATGTCTCCCCGTCAACGGAAATCCCGGTCTCGTTCCAGAACTCCCAGAAGACGCCACCACTCTCGTTCTCGCAGTCGCTCTCTTTCCCCAAAGAGAAGAAGGtcacgctcacgctcacgttcaagatcacggtcccgttcccgatcacgctccaagtcacgctccaagtcacgatcacgctctctctcGCCGATGTTCAAGTCCAATAGAAGTCCTGATAGAAGTCCAACTCCACCGAGTTTTCATCCATCGTATGTATCGAAGACGTTGGAAGAGAGAATCGATGAAAGCAATGTCGGTCATCAGATGCTCAAGAAAATGGGCTGGAGTGGAGCAGGCCTGGGAAAGGCTCAACAAGGAATCCACAATCCGATCTCAGGAGGGGAGGTTCGGGATAAGTTTGATAAGTTCAAGGGAGTGGGAAGCGACATGAACGATCCATTTGAAGCGTACAGAAAAAGCAAAAGTTATTCATTCATTGACTCGCGTATTGCTAAATCTGAAGCAAAAGCTGCTGCAAGGCGAGAGGCCATAAAAGAAGCTAGCAAAAGAGATCAAAAGTGA

Transcript

amic_s0287.g4.t1

GGATGGAAACATGGCGGCGTTTGTGGAGTAATTACAGTAGTTTTGGAAAGTGTTCTTTTACGGATACACAATGTTCGATAGATCGGTTGACAATACCGATGTAACGCAGCTTATTAGGAACAAAGAAGGGACACATTTCTGGAACTTTTCAAACTGTCAAGCAGATTTCACGATGTCGGCTTCTGTTGTACAGAACCCTCCTTTCCTGCTCCAGAAGATCAAGAACAGAAGAACATCATTGACAAACTTGCAAACTTTGTCGCGAGAAATGGCAGCAAATTTGAAGAGATGACCAAAGAAAAACAGAAAGGAAATCCAAAATTTGCATTTCTGTTCAGTGGAGAGTACTATAACTATTACAGATGGAAAGTTTCTTTTGAAATAGCCCAACAGCAAACTCAACAACATCTCCAAAGCCAACAACAGCTTGTGCAACAAGCAGCGGCACAATATGGAACCAATCCCCAAGCTCATTTGGTACAGCAGGCTATTGTCCAGCAGTCGATTAATTCAGCACCATGGCAACATGCTCAGCAGCAAGCTCAGCAACAGATGCAAGTACTTCAACAGCAACAGGCTCAAGTAGCAAATGTTCCCCTGTACCCAACCCCTGCAGCTCCTGTCCAACAAGCTGCTGATGTCGATATTACAGAATTAGAAAGCCTACTCTGCAAAATTATGGAATCGTGTACCAAGGATTCCATATCAAGTGGCAAAAATTATATCTTCTCCAATGCCAAGACTCCTGTGCAATGTCATCAGACCTCCCAGTATCTACTCAAGAGGGCCCTAGGTCCTGGCATGCAGTTTCAACACAAGCTTCACATCGTCTATCTCATCAATGACATTCTTCATCATTGTCAGAGAAAAGGAGCGCAGGACCTGCAGGAAGCTTTGAATAATATAGTAGTCCCTGTGTTCTTTGCCACACAACTGGGAGAATCTGCCGAAAATCTGCAGAAGATCAACAAAGTATTGGGTATCTGGGAAAGTCACAATTTATTTGAGCCATCTCTGCTACAGAAACTGAAAAATTCTGAAAATGCACAGAGTGCTGTGGATGCTGCTCGACATCAAGTTTTTGGTACTCAAGAGAGTTCCGCAGGTCAGAACTTGGAAGCACCTGCACAAGAAAATGTTGATGAACAAATAGACGCGGAAAAGGAAAAGATCACTGAAGACGAGAAAACGGGAGCCAGTGAAGCAGACAAGAGGCATATATTAATGCATACAATTGAGCCCGGATCCTCAGCAAGACCGCCGCCCTTCCATGGTCCACCACAGCAGTTTGATTATCAGCAACAGGAATATGAGCAATATACCGAACGCGGTCCACCGCCTCCCCCTGTCATGGCCAACGAGTTCAACCGTGGGAGACCGGAGAAAGAAGAAGATTTTACCGTTGATGAGTATGATATACCTCCCGACCCACCCGTCCCCGAGCCTATTATACCTTCAGCGATGTACTATGAACTTCCTGCTGGCCTTATGGCGCCATTAGTCGGGTTACCAGACGTGGAATACAAACCCTTAGATCCCGCAGCCCTTCGCCTTCCTGCACCGCAGCCACCAAGTGAAAGACTGTTGGCTGCAGTTGAAGCGTTTTACAGTCCACCCAGCCACGAGAGACCGAGGAACAGTGAAGGATGGGAGCAAAGTGGTCTTTTTGAGTTTTACAAAGCTAAGTTGAAGTACATCAAGGACCGTGAAGAAGCAGAAAAACTCAAAGTGCACGAAGTACAACCAAGCAGATCAAGATCAAGGTCTCGTTCCAGATCTCCTCGCCGTTCGCGATCTCGTTCCATGTCTCCCCGTCAACGGAAATCCCGGTCTCGTTCCAGAACTCCCAGAAGACGCCACCACTCTCGTTCTCGCAGTCGCTCTCTTTCCCCAAAGAGAAGAAGGtcacgctcacgctcacgttcaagatcacggtcccgttcccgatcacgctccaagtcacgctccaagtcacgatcacgctctctctcGCCGATGTTCAAGTCCAATAGAAGTCCTGATAGAAGTCCAACTCCACCGAGTTTTCATCCATCGTATGTATCGAAGACGTTGGAAGAGAGAATCGATGAAAGCAATGTCGGTCATCAGATGCTCAAGAAAATGGGCTGGAGTGGAGCAGGCCTGGGAAAGGCTCAACAAGGAATCCACAATCCGATCTCAGGAGGGGAGGTTCGGGATAAGTTTGATAAGTTCAAGGGAGTGGGAAGCGACATGAACGATCCATTTGAAGCGTACAGAAAAAGCAAAAGTTATTCATTCATTGACTCGCGTATTGCTAAATCTGAAGCAAAAGCTGCTGCAAGGCGAGAGGCCATAAAAGAAGCTAGCAAAAGAGATCAAAAGTGAACTTGTCTTTCGATTCGTCCCAGTGAGAACGGAACTTTAACTGTCGATGCACCTTTTCCATGAAAGTGAAAAGCGGAAGGACACTTCAGAACTTTGTGCTTGTTTTAAATGTCGCAAGCAAAACTACTCCCGTTTAAACTTCGTGAGAAGTGATTCTCTCATTGATGATAATTTTCGGAGATCAGCGACGTGTTCCGAAGTTACACCGAATGTGCACGATTTTAGTGTCTGTTTCTGATTCATTAATAAAGAAGCATTTCCGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWX8	Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens OX=9606 GN=CHERP PE=1 SV=3
Q8CGZ0	Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus OX=10090 GN=Cherp PE=1 SV=1
O15226	NF-kappa-B-repressing factor OS=Homo sapiens OX=9606 GN=NKRF PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818 all species →	CID	CID domain	Repeat	Interproscan
PF01805 all species →	Surp	Surp module	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan
IPR000061 all species →	Domain	SWAP/Surp	Interproscan
IPR039037 all species →	Family	Calcium homeostasis endoplasmic reticulum protein	Interproscan
IPR035967 all species →	Homologous_superfamily	SWAP/Surp superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12323 all species →	SR-RELATED CTD ASSOCIATED FACTOR 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12841	CHERP; calcium homeostasis endoplasmic reticulum protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.