Gene detail

Detailed information of amic_s0288.g22.t1 in Acropora microphthalma

Genomic Location: sc0000288_pilon:277216...278590
NR annotation: XP_029205668.1, CCAAT/enhancer-binding protein gamma-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28033	CCAAT/enhancer-binding protein beta OS=Mus musculus OX=10090 GN=Cebpb PE=1 SV=1
P21272	CCAAT/enhancer-binding protein beta OS=Rattus norvegicus OX=10116 GN=Cebpb PE=1 SV=1
P53568	CCAAT/enhancer-binding protein gamma OS=Mus musculus OX=10090 GN=Cebpg PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002503 (this species only) · gene tree & orthology
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07716 all species →	bZIP_2	Basic region leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031106 all species →	Family	CCAAT/enhancer-binding protein C/EBP	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23334 all species →	CCAAT/ENHANCER BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10049	CEBPG; CCAAT/enhancer binding protein (C/EBP), gamma	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.