Gene detail

Detailed information of amic_s0289.g7.t1 in Acropora microphthalma

Genomic Location: sc0000289_pilon:192037...205895
NR annotation: XP_015747161.1, PREDICTED: uncharacterized protein LOC107326923 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0289.g7.t1

ATGTTATGGCATCATGTTGTATCAGCAGACAATCCAGCTGACCAAGGAAGGCGTGGTGATAATGTAACTGGAGCGCAGCTGCGGTGGAATGGACCCACCTGGCTTAAGAATCCAGCCAATTGTCCACCTGAAGTTGTAACAAAAACTTCCCCAGAGAGCAGAAAGAAGGTGCAACAAGAGTTATTCGCAGTGGGAGTAGAAGGCAAGAGTGACTTCAAAGTCGTCCTTGAGATGTTTGACTTGCAAAAAGCGTTGAGAATTGGTGCTTGGGTAGCGAGATTCTTGCGCAATTCTTGGGACTCAACCAATAAACCCAAGGGTCCACTGAGCATAGCCGAGGTAACGAGGCATAAGACATTCTTAGACAAGAGAGCTCAGCAGCAAGGATTCAACAATGGAGTCTCATCAGAGACAGATGCAGATGCTGGAACTGAGGAATTGTCTATTGAAACTGCTTCATTACATGGTGATGCACAAGCTACACCAGAAGCTATTGAAAACACTCCACCAGTTGACCCAGAAGTGGACTTGGTGCAATCATTGCTTGAGAGGATTGCATTGTTAGAAAAGCAAGTCTCCTCGTGCGAAGAAAAAACTTCCCGACTGGAAAAAGAAAATGCAGTTTTGTTGGAGCGTCAATTTTCTCTGGACAAGATAAAAGATGATAATGTAGCAATTCTATTTTACACCGGTTTTCCAAATTACGACTTAAATGAACTTTTATCATTATGTAGACCCAAAACTTCAAAAAATGCAATATTGGAAAGGAGAAAAGTGTCTGAAGGAGAATGCAGACTCCGTCTCAACCAACGACACGGAATTTACGATAATGGAAAGGCTCTCCCACAGTTTTATCGGGAAAGAGTACTTGACCTGCATCACCAAGAATTTTCCCAGAGACAAATTGCACAGGATATGCGAGTGAGCGTCGGCTATGTAAATAAAGTCGTTCAATTTTACGAACACAGCAACTCGTCGCTGGCTGCGCCAAGACATCCACCGGTTCGCAATAAATTTACTGGGGATGTAATTGAATATGTAGAGTCTGAGAAATTGTGTAAGCCTAGTGTATACACAAGTGAAATTCAACAGCGTTTGCTATTAGATGGGATTTCTCCACCTGGCTATGTACCATCACAGTCTGGGATAAAAAAGTGCCTAAGAGAAGACTGTAAAATGACAAAGAAGAAAGTTTCTCAAGTACCCACAGAGTCATTGTCACTAGCAATTACCGAATACACCGATCATTTTCTTGAACAAGTTAGCCAACGGCAATGTACTAAACTTCACTTTTTCGATGAGAGTAGCGTTATTGTAACCACAGGAAATCGTGTATATGGCAATTCCTACATCGGTGAAGCTGCCATAGAATTCCAACGATACGCCTCGAACGCGAATTATACACTTAATTTACTTCATTCTGTTCATGGAGTAGATTACTTTAACATTTTGAGAGGGCCCTCAAATGGTATGGAGCTGTTAAATTTTTTCAACGAAGCTCTGGCAGTAAATAGAGTAGATGGATCAACAATTCTTGAGATTGGCGACATAGTTATTATGGACAACTGTGGGTTCCACCACGGACATTTTGTAGAGCCATTGTTACGAAACATGCTTCAGGACTATGGCGTTGATTTGCTTTACCAGCCTGCTTACTCACCTCACCTAAATACTTGCGAATTTTGTTTTCACCAAATAAAGTGCTACCTAAAACAGAACTCATCCCTGACCGCCAATGAAACTGAAATAGCGATTGGCGAAGGGGAAACACAACCAGAGGTTGTCCCTATAGTATCACCAGTTCTCATGGGTAACAAAGGGTTAAACCCCAGGAGGACATTAAATGAGATAGCTGCCACACCCCCACCCACTCCACCAGTTTCCTCTGCCCATTCTACCCCACCAATGAAAGGTTCCCATGGAAATTTAAATGTCAGTTCACTCAATTATGGCCGTGACAATGAAGACAGTGTAGCTGATTACTACTTACAATACCAGGAGGGGCATGGACACCAAGGAATCAAAGTATTCCCCTGTGGCCTGATTGTTAACCCAAAATATAGTTGGCTCGGGGCTTCCCCTGACTGGATAGTTTATGATCTTACAAGTGACCCCCATTATGGAGGACTGGAAATTAAATGTATAGAGTCTGGTAAGGGAATGACTCCCTTACAGACATACGAAGCCAAACGAGAGCCACAGTTTGGGAAAAAGAAATCGTTCTGTTTAATCAAAAATGGTGATATCCTTCATCTTGACCAAAAATATCATTACCATCATCAAGTTCAAGGCCAGTGTGGAGTTTCAGGTCTGAGGTGGAATGACTTCATGCTGATGACTGATTTGACCCTTGGTGACCAAGGAGTACATGTTGAAAGGCTCTATTTTGATTAG

Transcript

amic_s0289.g7.t1

GAAGATTCAGACCCACCGAAACATGTTATGGCATCATGTTGTATCAGCAGACAATCCAGCTGACCAAGGAAGGCGTGGTGATAATGTAACTGGAGCGCAGCTGCGGTGGAATGGACCCACCTGGCTTAAGAATCCAGCCAATTGTCCACCTGAAGTTGTAACAAAAACTTCCCCAGAGAGCAGAAAGAAGGTGCAACAAGAGTTATTCGCAGTGGGAGTAGAAGGCAAGAGTGACTTCAAAGTCGTCCTTGAGATGTTTGACTTGCAAAAAGCGTTGAGAATTGGTGCTTGGGTAGCGAGATTCTTGCGCAATTCTTGGGACTCAACCAATAAACCCAAGGGTCCACTGAGCATAGCCGAGGTAACGAGGCATAAGACATTCTTAGACAAGAGAGCTCAGCAGCAAGGATTCAACAATGGAGTCTCATCAGAGACAGATGCAGATGCTGGAACTGAGGAATTGTCTATTGAAACTGCTTCATTACATGGTGATGCACAAGCTACACCAGAAGCTATTGAAAACACTCCACCAGTTGACCCAGAAGTGGACTTGGTGCAATCATTGCTTGAGAGGATTGCATTGTTAGAAAAGCAAGTCTCCTCGTGCGAAGAAAAAACTTCCCGACTGGAAAAAGAAAATGCAGTTTTGTTGGAGCGTCAATTTTCTCTGGACAAGATAAAAGATGATAATGTAGCAATTCTATTTTACACCGGTTTTCCAAATTACGACTTAAATGAACTTTTATCATTATGTAGACCCAAAACTTCAAAAAATGCAATATTGGAAAGGAGAAAAGTGTCTGAAGGAGAATGCAGACTCCGTCTCAACCAACGACACGGAATTTACGATAATGGAAAGGCTCTCCCACAGTTTTATCGGGAAAGAGTACTTGACCTGCATCACCAAGAATTTTCCCAGAGACAAATTGCACAGGATATGCGAGTGAGCGTCGGCTATGTAAATAAAGTCGTTCAATTTTACGAACACAGCAACTCGTCGCTGGCTGCGCCAAGACATCCACCGGTTCGCAATAAATTTACTGGGGATGTAATTGAATATGTAGAGTCTGAGAAATTGTGTAAGCCTAGTGTATACACAAGTGAAATTCAACAGCGTTTGCTATTAGATGGGATTTCTCCACCTGGCTATGTACCATCACAGTCTGGGATAAAAAAGTGCCTAAGAGAAGACTGTAAAATGACAAAGAAGAAAGTTTCTCAAGTACCCACAGAGTCATTGTCACTAGCAATTACCGAATACACCGATCATTTTCTTGAACAAGTTAGCCAACGGCAATGTACTAAACTTCACTTTTTCGATGAGAGTAGCGTTATTGTAACCACAGGAAATCGTGTATATGGCAATTCCTACATCGGTGAAGCTGCCATAGAATTCCAACGATACGCCTCGAACGCGAATTATACACTTAATTTACTTCATTCTGTTCATGGAGTAGATTACTTTAACATTTTGAGAGGGCCCTCAAATGGTATGGAGCTGTTAAATTTTTTCAACGAAGCTCTGGCAGTAAATAGAGTAGATGGATCAACAATTCTTGAGATTGGCGACATAGTTATTATGGACAACTGTGGGTTCCACCACGGACATTTTGTAGAGCCATTGTTACGAAACATGCTTCAGGACTATGGCGTTGATTTGCTTTACCAGCCTGCTTACTCACCTCACCTAAATACTTGCGAATTTTGTTTTCACCAAATAAAGTGCTACCTAAAACAGAACTCATCCCTGACCGCCAATGAAACTGAAATAGCGATTGGCGAAGGGGAAACACAACCAGAGGTTGTCCCTATAGTATCACCAGTTCTCATGGGTAACAAAGGGTTAAACCCCAGGAGGACATTAAATGAGATAGCTGCCACACCCCCACCCACTCCACCAGTTTCCTCTGCCCATTCTACCCCACCAATGAAAGGTTCCCATGGAAATTTAAATGTCAGTTCACTCAATTATGGCCGTGACAATGAAGACAGTGTAGCTGATTACTACTTACAATACCAGGAGGGGCATGGACACCAAGGAATCAAAGTATTCCCCTGTGGCCTGATTGTTAACCCAAAATATAGTTGGCTCGGGGCTTCCCCTGACTGGATAGTTTATGATCTTACAAGTGACCCCCATTATGGAGGACTGGAAATTAAATGTATAGAGTCTGGTAAGGGAATGACTCCCTTACAGACATACGAAGCCAAACGAGAGCCACAGTTTGGGAAAAAGAAATCGTTCTGTTTAATCAAAAATGGTGATATCCTTCATCTTGACCAAAAATATCATTACCATCATCAAGTTCAAGGCCAGTGTGGAGTTTCAGGTCTGAGGTGGAATGACTTCATGCTGATGACTGATTTGACCCTTGGTGACCAAGGAGTACATGTTGAAAGGCTCTATTTTGATTAGACATGACATGGAACCTCACTACTAAAACTAACTGATTTCTATTTTAACCACATCATGCCAGCATTACTGGAAAAATCTTAAGTACCGGTGCAGTCAAAAAATCATAAAATTTAAGgtgccgagaaagaaacataaaagaaactgagagcgtgttgctgtagttaaaggagtcttcaaatgtttatcagccaatcttgctcttcaaaagttccttctagcgattaattttcgctgtaGTAGTGTAGgaatttcaattttatggcatgtttcaaagtgataatcttgaaaaatcggattgaaagaacattttaagttaaagatggtgaaaatctcaatgagaaagaaggtacaacaagtgacatttcgctGACCCACCTTCTAAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IH87	Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3-b PE=2 SV=2
Q645N4	Paired box protein Pax-3-A OS=Xenopus laevis OX=8355 GN=pax3-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000476 (this species only)
Transcription factor family	PAX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF13358 all species →	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR051703 all species →	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR038717 all species →	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609 all species →	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0289.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.