Gene detail

Detailed information of amic_s0293.g16.t2 in Acropora microphthalma

Genomic Location: sc0000293_pilon:191806...210974
NR annotation: XP_015766358.1, PREDICTED: tyrosine-protein kinase SYK-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0293.g16.t2

CTAACTTCCTATTGATTTTGCTAGTATTAAACTTTGACACTGATATTAGATGAGGAGCGTTTCAGCTCTGGAGGAGTTTAGCTGACACGGGTCTCCCATGGAAACAACAGAACGTCGAAGAGGAGCAAAATACATGGAAGGCTATTTGGAAATTAAAGAATCGGCCAAGTAACCCATGCGTCGCTGCAGCGGAAGTTTTGCGTTTGGGAGTCTCTTCGCAAACATCACGATAAACGTAGCCATAAAGCGGGGAATTGATTGATAAGCAACCGAGTATTCTGTATAGTCAACGAAGTGGATAATTTACTGGGTTGTTGTCCGTGGACCACAATTATTTTTCTTCAAGGATTCTGATACCCAAAATAAGGAAAATATAAGAGGACATGTGAATATAGGACCAAGTTCAAGCTTCAATTCTGGTAAAAAGAGCAAAGGCAAATTTGAGTTTGGGATCAAAGCAGAAAAAGGAAAGAAGTATTTATTGAGGGTTGGAACAGAGTCTCTTCGTGTGCAGTGGATTAATTCACTGGAACTTGCTGCTCAGGGTAAACCTTCACCAGAACGGTTTGCTCCTTTACAAGAAACTGTTGAAGAAGAGAAAACTAGCAACCAGTACACTGAAGTCCCCAATCCTACGTGTTCTACAAGCTCAGACATTTGTGAGGTGACACAAGAGGATATGAATAAAATGTTTAGTAGAAAACATAATTCATTTGGTGACCACTGTAAGAGATTATTGCGAACCAAGAGCAAGAGTTTTTGCCAAGAGGAAAGCCGTGAGCCTGTGTCAGAGGGAACAGATGCCAAATCAGAACCTTTTTATGATATTGTTCCTCACCAAAACCCTCCGTGGTATTTTGGCAAGTTGTCAAGAGAGCAGTCAGAAGAAATCCTGCAGAACTATGAGCCTGGAAGGTACCTCGTCCGTGACAGTGAATCTGTTCATAAACCAGGAGCTTACACTCTTTCATTGAAGCACAGAGACAGATGTCGCCACCACAAAATCGAGACGTTACCTGATGGGAATCTTGTCATTAAACAACACGAGGATAAGCCTTTTCCAAATCTGGTAATGTTGATGGCTTACTTTGTCAAAAGTCAAGAACGAGACATACGTTTGGAACCAGTAATTTGTGAGAAGAGAGAAGAAAACGCTGAAAGTGAAAATGGTTCTGGAGATCCAAAAGAAAGTTATGAAATCATAGACCAGCGCCCTGCACCAATAGGACGTGAAGAGCGAGAATATGCAGAGAGCCCTAATGCCGTTCCATCACCAGAACGTTCGCATGGATATCAAAATCATCCTGACAGACAAACAACAGAACGCCGTTCGCATGAATATCAAAATCTTCCTGACAAACAAACAACTCAACGGCCAACATTAAAACGACACGCTACGGAGTCTGTGATTAGTACGTACCAGAACGTACCGCCACCCATAAGGGAGCCAAATGGGGCGAACCGAACTTCCCCGTCACCTTATCAGCAAGAAAGCTACGAAGTGATGACACCTAAAGATGATTACGTGGAGCCGTTACCTGCTCTTCCACCAAGGAAAAAGTCTGTGGCCGACGAATTTCGTCATGGCTATGAAAATATCCCCGATAAACGACCTCCCCCGAGAACACCCGCTGGCGATAGCTATGAAAATGTACCACCTATTCCAGGGACATCTCCCAGTGACCCCCCTCAACTTCCACCAAGAGCTCCCAAGCAAAATTTACTTGGGTATGAAAATCTACCCTCAAGCGCACGGTCTTCTCCACGATTATCGTCTTATCAGAATGATCCACATTATGCCACTGGTAGTGGTCGGCATTCTACAGGAACGATGCAGGGATCCAGGCGCGAGCCGCACGCACAATTGAAGCGTGCATCTACATTACCTCCTCATATCATACAGAATACTTTAGGACAGATGAGTATAAACGAGGAGCCTTAATAGGAAATATACAGCACAAAGATCCGACATGATAACTTGAGTACTGTTGTGGTCTCGCACATGCGCCATCTGTCAGGAATGTGCCATCTATTATTATGGGTTAGTCGATTTCTGTCAAAAAATCGAATAAAATTCTGGACTTCGGGCCAATCGAGGCACGTAAAAGAGGATTACTTAACACACTTCGAACACTTGTAGACAGCGCTatgatgacagcgacggcaacgaggaagtcactctaaaatataacattgcattatttttaacataatagacttgcttttagtcgttcagaatccaaaatgagcataaacagtaaagaatgaatctgtcatgaacagattagagcaaattCAGTGAGCAAAGTTAAAGCGCCGTATGCTTACGCCCTCCACAGCACTTATTTAACATCTTCGTTCCACAGAGGACGACAAAGAAATGTTTTGAATGAAATTAAAAAAAACAAAAAACGCCCGTGCCGGGGGTGCAGAGATTATTGTTTTTGCTCACTGAAttgtttttaatgtcataccacgtgtgttctgttgggaatttccttttgtcctttgataaattatgcgtacatatgcacgtgcgcaaggctgttccctagagtagcatcacgtgatgtgaaGGGTCCATTGTTCTTCACCGTTGTCTTTGCGCAAGCTCCCTAGTGACGCACTGATGATTTCACCACACCATTTCTTCGTATAATGGGAGGTTTATTTAGCCATTCTGTGCTTATACAATATACTAATTCAGTACAGCGTTTAGTAAGTAAGCAGTCGAAGGGTACTCAACATAAAAAGAGCTGTTTTCAGTATAGTTAACCTTTCATTTCCTCGATGACCTGCTGAGAAGAACTAGCCTAATTTGCTTTTTTGTAGCGCGAGGGAATGTTAGATCTGCAAGGTCACATATATACGTGCGCCTTCAGGGAACGAAAAATTGAATTTTTTGAATTTTTAGTAATTGTGCTCTGATCAATTACAACAGACACGAGAAATCATTGTGAACCAATCACAGCTTGTAGTAAGCAGAGTACGGGAAAATTGATTGTCCTGCACAAAATGGTGTCTTTATTTTTGTAATAGCAAATTGTATAAGTAAGAAAGCAAAACAAACGAATGAGTACGAAATTCCGTTCGACGCTCCAACACTTCTGCACTCGGAGGTTTTGTCGGGAGAAAACTAGGGAAAGTCTGTTTATAAGTTGATTAATCTTAGCGGTAAGAACATGTCTGAAATGAATCAAAAACAAGACGTAGCATTCGTTTCCAGTTTTGCGGTCTCATTTAATGGTTCGGGCACAGCTCGGTCGCTTTCAATAAGACGATTTACATTTCATCCCAACTAAGAACTGCTTAGCAACACTTGCATAACATGGTAGTTTGGCTAAACATAATTTTCATCGCTGTTGTCATTTACTGATTTCAAATGTCGTCTGCCCTCGGGTCTTCGTCTACTTGATTTATTGTTGGGAAGAAACAATATTGAAAACTTTTTAAAAATTATTTTCAACATGTTATTTTACATTTTAATTATTATTTTTCAACATGTTACTGTATACTGCGATAGCTTTGAGCTAAATTGTATAGAATTTTGTAAGTATCACATTAAACACTTTTAATTCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27447	Tyrosine-protein kinase Yes OS=Xiphophorus hellerii OX=8084 GN=yes PE=2 SV=3
P14084	Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain S1) OX=11881 GN=V-SRC PE=3 SV=3
P00525	Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain rASV1441) OX=11894 GN=V-SRC PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003408 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR051184 all species →	Family	Tyrosine-phosphorylated adapter molecule	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969 all species →	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0293.g16.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.