Detailed information of amic_s0304.g3.t1 in Acropora microphthalma

Genomic Location: sc0000304_pilon:7723...23235
NR annotation: XP_029204379.2, leucine-rich repeat-containing protein 40-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZLN0Leucine-rich repeat-containing protein 40 OS=Gallus gallus OX=9031 GN=LRRC40 PE=2 SV=1
Q9H9A6Leucine-rich repeat-containing protein 40 OS=Homo sapiens OX=9606 GN=LRRC40 PE=1 SV=1
Q4R3P6Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis OX=9541 GN=LRRC40 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005921 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12799
all species →		LRR_4Leucine Rich repeats (2 copies)RepeatInterproscan
PF13855
all species →		LRR_8Leucine rich repeatRepeatInterproscan
PF00560
all species →		LRR_1Leucine Rich RepeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025875
all species →		RepeatLeucine rich repeat 4Interproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR050216
all species →		FamilyLeucine-rich repeat domain-containing proteinInterproscan
IPR003591
all species →		RepeatLeucine-rich repeat, typical subtypeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48051
all species →		-Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0304.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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