Gene detail

Detailed information of amic_s0307.g3.t1 in Acropora microphthalma

Genomic Location: sc0000307_pilon:33005...58405
NR annotation: XP_044178666.1, uncharacterized protein LOC114960660 isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0307.g3.t1

ATGGGACAAGACCTTGCGAAACAAGTTCATCCAACATTAAACAGGGTGGAAGCAAGGAACTGTGCAGTATACGTACCACAGCCAAAGGATCTTTACATGAAAAAGTCTTCGAGTACGGACCCATTAAAGAGATTTTCAGAAAGTGAAGTACAGAATATGGTCAATGTTTTCAAGAAATTAGCAGCCCTTTCTCCGAAGGACAAGTTTATTGACAGGAAGACATTTTTACACTACTTTCCCTTGGATGGGGACCTTGCAGAGAGGCTATTTAGAGCTTTCGATAAAGATGGAAATGGTCGTATAGATTGTGATGAGTTTTTGGGTGGGTTAGCTTTATGTCTGAGAGGATCAACTGAAGAAAGAGGACAGATCATATTTGACATGTTCAACCTTGATGGGAGTGAAGGAGTCAGTATATCTGAAATGACTGTCATGTTAAAATCTTTGTTGTCAGCAGCTGCAAGAATTATCCAAGCCAAAGAAAACCATCCTCACTATGAGGGTGACTACAGGACATCGGCTGATGTAGAGTCCACTATAGATGAGTTCATTAGGGATGCCCTGTCTCAATTCAATGATACTACAAATGGCAAATTGTCCAAAGCGGAGTTTATTAGCTGGATGAGAAGACACCCTGTCATACTGGACTCGGTGTTTCAGCACTGCAGTATAAGAGACAAGCGTGTCAGCAAGGGGTTTCAGTATGATCGACTTCACGATGCTCCTATGCCATCGTCGACGGTTGCATCGACGCATCAGGGAACGAGACGCACTGAGCTGCTAAGCCAAACGTGGGTGGATGGCCTACAGCAAGAAACAGAAGAATCTCACGTAGCAAATGAAGATGTGTTCAGCGGTAGTTATGCCAACTCAAATTACTTATGGAGTCCAGTCTTCCCGGCCAGCTTAAGCATGCCTTGTGCCCGCAGTAGGCACTCGGTATGTGTGTGGGATGGAGGACTCTTTGTGTATGGAGGTCGAGGAACCCGAGGGACATTAAAAGACTTCTGGAGATATGATATAGGCTCCAACACTTGGGATCACGTGACTGTAGAGGGCGATCTGAAGCCGCCATCGCTTCAGGAACACACAGCGCTCACTTACAAGGGTAAAATGTACGTGTTTGGAGGAGACTTCACCACAACAAATGACACTCCATTGTGGACTTTCAATTTTCGAGAAAAAGTATGGGGAAAGCAAGCAGACAAATCTTGGGGCCCAGGCACACGTCGCTGTCACTCAGCAGTGCTACATGAGGCTTCCATGTTCGTGTTTGGTGGTTATATCGACATGAGAGGCGCTAGCGATGAACTCTGGCAATATGAGCTTGACACCTTAAAATGGAATAGAATAAAGTGGAAAGGAGAAGGACCAAGCCCTCGCTACAGTCACTCAGCGGTTATTGGTGCCGGTGGTATGTGGGTGTATGGAGGCTTGGAAGGTCTTCAAGTCAAGAGCGATCTCTGGAGGTGGAGCTTCGTTTCCCACTCGTGGTCAAGAATCAAGAGTCGCGGTGGTCCCCCAGGGCTGTTTGGACATTCTGCGATCAAGATTGGGGAAGGCATGTTAATATTTGGAGGAGAAGCAACAGATGGCAACTTACAAAACACCATGTGGCGCTTTGAATTGGGGAATCGTACCTGGAGCACTGTTCGTCCGCATAGTGGTATATCACCTCCTATCCGAAGTTGTTTCTCTATGGGAGTAGTCCCTTCGTCTTCTTTCCTCTTATCCATTCGTCCTTCTACGTCACTGTCTGCTCCACCCTGTACCCCAATGCCATCGAGCTTTCTGCGAAACGAGAGTCTGGAAAACAGATCAGTTACCCGACGGGAGCTTAGAGAGGATTCGTGGCATGACCCTGTCACCCAGTGGGATATTACTGCTGGATCTATGGCGTCTTTAGCTTCAGAATCAATGTTACCCAATGCAGTGGCTAAATTTGCTTTCAATAAACCTGATAAGAATCGCCCTACATCCCTGATAAGCACCGTTGATTACCAGAATCCTCGCGAAGTGTACGAGAACCCGCGAGGAATGACGTTATCGGATGATGCCTTACACGAACCACACGATAGCAAGGTCGAGCTTCATTTGAACTCTTCTTCAGGCGAGAGATCCCAGACCCTACCGTTTTGGGGTGTTTCCGGGGTTAAAAAAGGACGAGTGCAAAGCCACGAACTCCTAAGTGTGGACTCTAGTATGTGCACGGATTTGAGGAAGAGTTTAGCTCATCCTGTTGTCTGTTTGTTGGTACTTGGAGGCAAGACGCGTAACCACACCGAGATGGGAAGAACACTTGACTTTTGGCGATGTGACATCGACCCAGTGGAGAAGTCCACACAGGGAATGGAAAAAATAATCGCTGTCAAAAAGAACTCAGCAGAAAAATCCAGCAATCTTCCCCATATACACTTGAATCATTCTTCGTGTTCCGCTGACCTAGATGACCAAGGGACTCAAGTAATTGGAGGTGACCTGGAATTGGCCGATATGTCGGATAGTGATACTCGGAGTGTCGACCTTTTAATAGACGACATCGACGGTTACGAGAGGACTTCACGAAGCTTTCCGAAAGTTTCCATATAA

Transcript

amic_s0307.g3.t1

AGCTCACGTTTGAATCAAGCTGAACTCCAACGAACCTAAGCCTCCGTAACCGGATCTTTTGTTTCATCAACATTTGCTCGACTTTCGATATGAATGAACGCCTTTTTTATTGGATTTGCAAACTATGGAAACCGGGAGACGAAGGTTGTACCAACATCTGGAATATTTAGCTTATAAGCGCTTCACTTGCCCTTTATGCGTCTACGGTCATCATTATTGACATACGAGAGCGATAAATTAATTAAGGGCGATATGACTCTGCTGTAAACGGCATGACATTTTCAAAGCTATGGGACAAGACCTTGCGAAACAAGTTCATCCAACATTAAACAGGGTGGAAGCAAGGAACTGTGCAGTATACGTACCACAGCCAAAGGATCTTTACATGAAAAAGTCTTCGAGTACGGACCCATTAAAGAGATTTTCAGAAAGTGAAGTACAGAATATGGTCAATGTTTTCAAGAAATTAGCAGCCCTTTCTCCGAAGGACAAGTTTATTGACAGGAAGACATTTTTACACTACTTTCCCTTGGATGGGGACCTTGCAGAGAGGCTATTTAGAGCTTTCGATAAAGATGGAAATGGTCGTATAGATTGTGATGAGTTTTTGGGTGGGTTAGCTTTATGTCTGAGAGGATCAACTGAAGAAAGAGGACAGATCATATTTGACATGTTCAACCTTGATGGGAGTGAAGGAGTCAGTATATCTGAAATGACTGTCATGTTAAAATCTTTGTTGTCAGCAGCTGCAAGAATTATCCAAGCCAAAGAAAACCATCCTCACTATGAGGGTGACTACAGGACATCGGCTGATGTAGAGTCCACTATAGATGAGTTCATTAGGGATGCCCTGTCTCAATTCAATGATACTACAAATGGCAAATTGTCCAAAGCGGAGTTTATTAGCTGGATGAGAAGACACCCTGTCATACTGGACTCGGTGTTTCAGCACTGCAGTATAAGAGACAAGCGTGTCAGCAAGGGGTTTCAGTATGATCGACTTCACGATGCTCCTATGCCATCGTCGACGGTTGCATCGACGCATCAGGGAACGAGACGCACTGAGCTGCTAAGCCAAACGTGGGTGGATGGCCTACAGCAAGAAACAGAAGAATCTCACGTAGCAAATGAAGATGTGTTCAGCGGTAGTTATGCCAACTCAAATTACTTATGGAGTCCAGTCTTCCCGGCCAGCTTAAGCATGCCTTGTGCCCGCAGTAGGCACTCGGTATGTGTGTGGGATGGAGGACTCTTTGTGTATGGAGGTCGAGGAACCCGAGGGACATTAAAAGACTTCTGGAGATATGATATAGGCTCCAACACTTGGGATCACGTGACTGTAGAGGGCGATCTGAAGCCGCCATCGCTTCAGGAACACACAGCGCTCACTTACAAGGGTAAAATGTACGTGTTTGGAGGAGACTTCACCACAACAAATGACACTCCATTGTGGACTTTCAATTTTCGAGAAAAAGTATGGGGAAAGCAAGCAGACAAATCTTGGGGCCCAGGCACACGTCGCTGTCACTCAGCAGTGCTACATGAGGCTTCCATGTTCGTGTTTGGTGGTTATATCGACATGAGAGGCGCTAGCGATGAACTCTGGCAATATGAGCTTGACACCTTAAAATGGAATAGAATAAAGTGGAAAGGAGAAGGACCAAGCCCTCGCTACAGTCACTCAGCGGTTATTGGTGCCGGTGGTATGTGGGTGTATGGAGGCTTGGAAGGTCTTCAAGTCAAGAGCGATCTCTGGAGGTGGAGCTTCGTTTCCCACTCGTGGTCAAGAATCAAGAGTCGCGGTGGTCCCCCAGGGCTGTTTGGACATTCTGCGATCAAGATTGGGGAAGGCATGTTAATATTTGGAGGAGAAGCAACAGATGGCAACTTACAAAACACCATGTGGCGCTTTGAATTGGGGAATCGTACCTGGAGCACTGTTCGTCCGCATAGTGGTATATCACCTCCTATCCGAAGTTGTTTCTCTATGGGAGTAGTCCCTTCGTCTTCTTTCCTCTTATCCATTCGTCCTTCTACGTCACTGTCTGCTCCACCCTGTACCCCAATGCCATCGAGCTTTCTGCGAAACGAGAGTCTGGAAAACAGATCAGTTACCCGACGGGAGCTTAGAGAGGATTCGTGGCATGACCCTGTCACCCAGTGGGATATTACTGCTGGATCTATGGCGTCTTTAGCTTCAGAATCAATGTTACCCAATGCAGTGGCTAAATTTGCTTTCAATAAACCTGATAAGAATCGCCCTACATCCCTGATAAGCACCGTTGATTACCAGAATCCTCGCGAAGTGTACGAGAACCCGCGAGGAATGACGTTATCGGATGATGCCTTACACGAACCACACGATAGCAAGGTCGAGCTTCATTTGAACTCTTCTTCAGGCGAGAGATCCCAGACCCTACCGTTTTGGGGTGTTTCCGGGGTTAAAAAAGGACGAGTGCAAAGCCACGAACTCCTAAGTGTGGACTCTAGTATGTGCACGGATTTGAGGAAGAGTTTAGCTCATCCTGTTGTCTGTTTGTTGGTACTTGGAGGCAAGACGCGTAACCACACCGAGATGGGAAGAACACTTGACTTTTGGCGATGTGACATCGACCCAGTGGAGAAGTCCACACAGGGAATGGAAAAAATAATCGCTGTCAAAAAGAACTCAGCAGAAAAATCCAGCAATCTTCCCCATATACACTTGAATCATTCTTCGTGTTCCGCTGACCTAGATGACCAAGGGACTCAAGTAATTGGAGGTGACCTGGAATTGGCCGATATGTCGGATAGTGATACTCGGAGTGTCGACCTTTTAATAGACGACATCGACGGTTACGAGAGGACTTCACGAAGCTTTCCGAAAGTTTCCATATAAAAATATCAACTAAAAATGTAACTTTTTCGATGCGAATCAAATACGTCGTCATATAAAGTGGACGTCAACAAAAGACGTGAGAATCGAATAGCGTAAAAGTGCGAGTGCGACTGAGCCGGAGAATTTTTGAGTTAATGGAAAGCAACTGTTTCTGTGTATGAGCCATGCATAGAATTGTTTAATCCTAAGTGGATAATAAGACGACTTCTGGCTCAATGAAATAAGCACAAAATGCACTTGCTGTACACGGGTGATTCATCATCATCGCGATAACAATGCAATTGGCAATTTTACTGCATCTCTCTTTTGTAACCTTTGCTCTTGTTGTGCTTAATCATTGATTGGCAGAAGACTGTTCTGAGAGGAGCATTTCATTCACTTAGCAAGATATGTAAACGGCCAGAGCTTAAAACTGACAGCGTTCTTACATTGCCAATGATATATTAAATCAGTATTTAAAAGATTGCAATTGATATATTTGAATGTATGGAGCTAATAATTTTCAAAAAGTATAATTTGTAAGTAGAATATTGGAACTGGTTTACTGTAAATGAAACCAAGTTGATGGTGTTCTCAACTAAATAGAAGTGGATTCGGCTAAAATTTGTGTATGATTTCGAGGAGTGCTTCAGTGAGATAATTTAAGTGATCAACTGTTTCAGCTCAACCATGTCTGTCAACTTACCGGCTTTTGATTGTTTTCTTGTGGCTTCAAAACTGTAACAGTCAGATTTGGTAAACCGCATACCTTTGTTATCTTGGTACCTTTAACTTCCTCGTTTCGAACTCGGCACCAACGGTTTAGATCCGTGGATTGTTGTTATTCCGTTCTCTGTCTGCCTAGTATTTTTTGTATGAACTTGAAATGATGAAAATATTTTTCTTGAGCTGGGTTTTTTTCTCCCTCGAATATTTTGGCCCTGCGTAATTATTTAATAAGCACAAATTATGAACGAAATATAAACTGATATGCAAAAGAACCTTCAAGATGTATAAGATAAGTAAAATTGATTGTGAATGTTGTCAAAGAAAATGAATAAAAGAAACTTTTAACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86A72	Recoverin family protein DDB_G0274781 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0274781 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003991 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13405 all species →	EF-hand_6	EF-hand domain	Domain	Interproscan
PF13964 all species →	Kelch_6	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011043 all species →	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR052637 all species →	Family	Cullin-RING ligase complex substrate-recognition protein	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46461 all species →	KELCH DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0307.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.