Gene detail

Detailed information of amic_s0308.g9.t2 in Acropora microphthalma

Genomic Location: sc0000308_pilon:133536...146481
NR annotation: XP_044180653.1, pseudouridylate synthase 7 homolog-like protein isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0308.g9.t2

CTTGCGACATGCATTTTGCCCCTTGTGCAGTGTACACGAATGAAGTTGGTCTGCTGCTGAAAGATGCCGTTTGGTGCTGAGTGTTACCTTGATTGTAAGCGAGAGGGTTTCACAGGGCAGATCAAGCAGACATGGCAAGATTTTGTTGTCACTGAAATTGACCAAAAAGGACAACTGGTAGAGCTGGTTCGTGGAGAGATTCCCTTTGCCAGGGAAGGGCAGCAGAAGCCATTAAGAGAAAAGAAGAAACTTACAGTGCAAGGCAAGGAAAAGCCAAGAGAAAAGAAGATAGCTGAAGAGAGTGATTCCTCGTTTCTAAATCAGATTTCAGATTCATTTGAAATGCTGAAAGATGTTGCCTTGGAAGATTTAACAGTGAATCTGGGGAGCAGCAGACTGCAAGAACTGACAGAATTTGCTTTGCTTGTAGAAAACAACAGAGAAAGTGACCAAAAGCTATGTATCGGTTCTGAGTTATCAAAAGAAGAGCGTACTTCTCTTCACAGGAGTGTAAGGTTGACATTTCCTCATCTTAAAACTGAAACCATTCGGAAAGAGCAAGAGGGACAAGTTCCTGCGATATTTGCAAGCAATGACAAAGTCTACTGGGAGTTTTGTAGCCTCTTGAATGACAGACATCAAGTGGACAGGTTACTATGCTTTGCACATTGGGAAAACAGAAGAAAACCAACTACACTTAATCTTGATGTCAGTGGAGCAGACAAAGAACAAAGAACCAAGATTCACAGATTGTTATCCAAACATTTTGGGTCATTTCTTGAGAGCAAAACTTTCAGTAATGGAGATAATAATAAACACAGCTCAACAAGATCTGGTGAAAGTTATATACAGATTCGAATGAGGGCAAAAGGAACAAAGGTGACTTGCCAGTATGACAACAAATATATGGATTCAAGAAAGGCTGACAGTGAATATACAAGATTTTCTTTACGCAAGATAAATATGGAAACTCTTGAAGCCATTCAGCGCTTGTCAACCTGTTTGGATGTCCAGCCATCAGCCTTCAGTTATGCTGGTATTAAAGATAAAAAAGCTGTTACCACACAGCATGTGGTAGTTAGAGGAATTTCCCCTGAGCAGATGTCTGCCATTGAAGGTCACCCCTCCCTGAAAGGCATAAAAATTGGTAGCTACAGGGGAAGAGTGAGTGGACCACTCAGGATGGGTGGTCTGAGTGGAAATCATTTCAAGGTTGTTGTCAGAAAAGTGCAGTGTCGTAAGAGTCATGCAAGAAACCAAGAAGAATGTACAAAGAATATTCAGGAGGCTGTTTCTTCTTTATCGTTTAATGGCTTCTTGAACTACTTTGGAGCTCAGAGATTTGGAATGGACGACAAAGAAGTAAACGCTTGTGACATTGGGCTGGCCATGCTGCAGGGAAACATGGTCCACGCTGTCAAGTTACTCTTTACCCCATCGGAACATAACCCTGACCACGATGTTAATTGTGCTAAAAGGTGACGCTCCGTTTCTTCGCGTTCTCCTTGCAACCTTGAGATATTTTTGGGAAGCGGGTGATGTTCAGGGCGCCCTGGCTAAGATGCCCGCCTATAAAATCCGCGAAATCCTGGTACTCAAAGCTCTTCACAGACATGGAACTGATACGGATGGCTGTCGCAAAGCTTTGCTGAATGTCCCGTACTCAATGCGATTGCTGTTCGTTCATAGCTACTGTAGTCTGGTATGGAACATGATGGCCTCCTATAGGATTCAACACTATGGACGAGAAGAGGCAAGTGAGGGAGATTTGATTGTGGATCCGCCTACGAGTACGCATGACCTTGATAGAGAAGCCGCTGGAAATGGTGATTGTGGCGGTTTCGACTCGTGTGGTGACGAGAACAGCGGTATAAGGCGTGATTGTGTGAGGTGTATAGCCAATCACGAGCAAGGAAAATATAGCTTGGTCGATGTCGTGCTACCATTACCAGGATACGGCGTTCAATACCCAGCGAATGATGTGGGAGAAATGTATAAGAAAAGGTTAGAATCTGACGGGTTGACCTTAAAAAGTTTCAGGCTTAGAGGACTTGGTATTAATGTGCCAGGTGCCTACAGAAAGCTTGTTGCCTTTCCAGCTGAGTTGAATTGGAACTATGTCAAAGACGCTGATTGCCACTTCGAACCAGGCGAAAGCTCTGGTCTCTCAGAAAATGGATCAAAACGATTAAGACTCAATGCTGATAGTTGTCCTGGAGATGAAGAAAAACAGTCATTTCGATTTATGTCAAAGGCGAAAGAACATTCCACGATGGCGCAGAGACACGATAGTAACTGCTGCAATGATGTTGAATTGTCTTTCCGCTTGCGACCGTCATGTTATGCGACGTCGTGTATCAGGGAATTGTTGAAGAGCTAAGCTAAATCTCCTCTGGTTGTCTGTCGTAAAGTGTGGTCTTTGATGTATTAGGAATACTCGATATTTCGGTATCATTTAACGCGATACCTATTATCAAGATTGATGGATTCGAAACGATCCTCGTGCAATATATATCTAATACTTCGATGGTATTTACGTGTCATCGATGCTAGTCGCCTCAATACCAAGTGATCAGCACTATCGGTATCTTTGCTTCAGTGCCCTCTGTGGGATCGTTCATTCGTGGTTGATAAAGCATTTTTGTTTTGGCACGAGGATTCCTAGTCTGGGTCTCACTTTGTGCAACCGGTGTTACGCCATCTGAGATCGTAACAACGGAAACGTGCGCCGAGAAAGATTTATCTTCGCAATAAATCGCTTCCTAGTTGATACGGTCGGCTATTGCGTCACTTCTCGATCCTTTTTCCCTCCTCCCTGGCGACTGCGACAAAACAACTTTGCATATTTAAGTAGCAAAGGCAATGATCTCTCAGCCCACGCGCGCACGCCTCGCGCGGGCCACGTGTACCGCACGCACCACGCGCACGTTTAATTTTAGTTAATTTTGTCGCAGTTCTTTGTTAaatagagagcggttttcaaatgactgtcgaaagtaattacgtgttgcgattgcgacgcttagtgattggcttaaaagactcgcgccagtttttcaaccaatgagaagcaaaaacaaaaccaatcgcaccacgtacgcgtgatttttcccgcgcttcgagcgagttacaggtaattgctaggaattgtgattggttcattgcgctgcctgcttctgttgtgattggtcggagtaattgctttggctttggtttttcgacagtaatctgaaaaccgctctaaCGTCGCGAAATAATCGAAATCGATGTCCTACGAAAGGTGCCAGCCCATAATGTTGCCCATAACACTCACTTCCTCTCTTCTTCACTATTCTTTTTCTTGCTGATTTAATATATGGACAGTAAAAGCAGAATTTGGATTGAAATCGATTTCGAACAACTGCTTTGTGATAACAATAATGTCAATCAGATGTGTTTTGACATGCCATCGTGGAAGCTTTCGTTGTCGTGCAAAGAAGTGTGTCAAAAATAAAAGAGGGCATGCGCTAGACATGAAAGGCGTGCAAAGATCGTGTTTTTGCCCATTACGACAACAATTTTAATTCAAAAGATCAAATAATTAAGTAATTTCAACAATTCTTTTAGATCTATGACTTCTAAATTACAAAGCTTTTGCCGTCAATTAGTGAGGGCTATTCGAGGCGGGCAAAAGAGCAAAAAATAAATAAATAAAAATTGAGAACAAACCCAGGCGCAATCTAGTTTTTCGTATGGTTTACAGCCGGAATGAGACAGGGTGGATTACAGAGTTAATCCCTTAGAACGCTTTTACATATGCAGATTTGCGAGTTCACTTTCTCCTTCACCGTCATCTCTATGTAAGCTCCCTCATAATGCGTGAAAAGTGATCGTTCGGAATCCGGTGACCACAACCGTCCTTATCGTCTTAGGTACAAAACAAATTGACGATATTCACTTCAATAGAGACTTTTGCGTTGAGGCCTATTTCCCCCTTCAACAACGGAAGCCGATGTTTTGCAACCAAAAGCAAAAATATCAGAAGCTAACCAAATTTGTCAAACTTTGGCCAAGACCGCATATCCTCTGACGCTTTTGAGGAGGCGTTCAAGCTTGTTTCATCGCCACAAAACTTGTCACGCAACTCGGTAATTTAGTTTTTACTGAAGCCGTTTCGCAATTTCGATGCCTGCTGCAGCTGGTTTTCCGCCTTTTGGGCTGATAAAGGAATCATTTGATACCGCTGAGTTTGGTAAAATATATTTCTAAAAACTATTCGCAGTAGAAGAGGGTTAGCCATTTTCTGGCACGGACAAAAATAAAGAATTGTAAATTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1L8I0	Pseudouridylate synthase PUS7L OS=Danio rerio OX=7955 GN=pus7l PE=2 SV=1
Q9H0K6	Pseudouridylate synthase PUS7L OS=Homo sapiens OX=9606 GN=PUS7L PE=1 SV=1
Q8CE46	Pseudouridylate synthase PUS7L OS=Mus musculus OX=10090 GN=Pus7l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001686 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01142 all species →	TruD	tRNA pseudouridine synthase D (TruD)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001656 all species →	Family	Pseudouridine synthase, TruD	Interproscan
IPR011760 all species →	Domain	Pseudouridine synthase, TruD, insertion domain	Interproscan
IPR042214 all species →	Homologous_superfamily	Pseudouridine synthase, TruD, catalytic domain	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13326 all species →	TRNA PSEUDOURIDINE SYNTHASE D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07756	IP6K, IHPK; inositol-hexakisphosphate 5-kinase	EC:2.7.4.21	Autophagy - yeast	ko04138	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.