Gene detail

Detailed information of amic_s0319.g13.t2 in Acropora microphthalma

Genomic Location: sc0000319_pilon:127356...137865
NR annotation: XP_015770455.1, PREDICTED: coadhesin-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0319.g13.t2

TACAATTTTTCTTGCAGATCTGAAGCTATCAGACCGTCACTATCAGTCAGTTGTTAAATTAGTCAAAGCCAGATGATTATCGCGCCAACTTCAAGTTACTGatggtaattgaacagagcggagtgaaatttggtctgaaatttcaaaatcgaacgagcacgcagcGGGGCCTCATTTGAATCGACCCATTGCAAATACGAGTTACTATATTGAGCTGACTCATTACGTGGAGAATTTTGTCAGCCGCCTCTTGCCACACATTCTCAGTTACTTTCAGGTTTTCCACCAACACGATGAACATCAATCATAGCCAAGCTGCATTTTTAATTATTCTTCTTGTGATAGCACAAGGGAGTAGTCTAAAAGCTATTGATGGTGGTTACTCGGAATGGAGTAAATTTTCGGAATGTAATGCCACGTGTGGTGCTGGAATAATGGTTCGCAAACGGTCCTGTAATAACCCTGAACCACAACACGGTGGTAAAAACTGCAAAGGCCTGGGGACAGCTGTGGAAGAAAAAAATTGCAACTCGTTTCCATGCCGTATGTCAGACCAACACTTGGTCATTGCTTTTCTCTCTGGCATTTATTTCTACTGATTGAAGAAAGGAGTATACGGTTATAAAATTAAAGTAACGACACACTTTGTCTGAAGTGAGCGCGCATCCTGGAAACAAGCTCTGGATGGTGGCTATTCCCAGTGGTCGAATTTCACATCGTGCTCTGTGACTTGTGGCGGTGGAGAACAAACGCGCATAAGGTCCTGTACCAATCCTGTGCCTTGCTGTGGTGGAAGAAACTGTGAACATCTGGGACCAAGTATGGAGACAAGGAAGTGTAACACGTGCAAATGCGTTATTGATGGTGGATATAGTGAATGGTGCTCGTTTACAGCATGTAGCGTCACTTGTGGTGGTGGAGTAAGTTACCGTACGAGAACGTGTACTCGTCCTCCTCCTGAGAATGGAGGAAGGAGCTGTGACAGTCTGGGACCAGACATAGAGACACAAGAGTGTAACACAGAGGAATGCCCTATAGATGGCAACTACACGAAATGGGGAAACTGGTCTGAATGCAGTGCAACGTGCGGAGGTGGTTTACGAATACGAACAAGGACTTGCATCCTTCCGTCACCACAGTACGGTGGAAAGAACTGCAGTGAACTTGGTCTAACTGAAACACAGGGATGTAACCCATACCCGTGCCCCATTGACGGTAATTACAGCAAATGGACGGAATGGTCAGAATGTAGTGCTACTTGTGGAGGTGGCTTTCGATCACGCGCTAGAAATTGTACTAAACCCTCGCCGAGACATGGTGGAAAAAACTGCAGTGAGCTGGGACCTGCAAACGAAACGCAAGAATGTCATACTCACGGCTGTCCCCCACCGTGCACAGGAGGCCTAGACATTGGCATTATCCTTGATAAATCAATGAGTGTGTCATCGAAACACATAAGAACGGCGATTTCTTTTGTCAAGAAATTGGTGGAAGAGTTTGAGCCAGCTCCAGACAAAGATCACTTTGGTTTAATAACATTTAACCAAAAAGTCATGATTGAGTTCAGTTTCAAAGATGAAGCGGATGACAGCGTTGATGAACTCAAGGAGAGAATTGACAAAGTAGATTTAGCCTTAAAATATCAAACTCGAACTGATTTAGCGATGAAAGCGGCAAGGGACATGCTGTTCTCGTTGAGTGGAGGCGACAGACCAGATAAACCAAACATAATGATTGTTATCACAGATGGAAAACCAACGAAGCAACCCAAACCATTCCAGGAATTCGCAGTCGAGTTTCACAAAGACCCTAAGGTTGCCGACCTTTATACTGTGGCAGTTGGTGTTGGGAAAAAAATAAACGGGAACACCCTACATGATATTGCTGGTGAGAGGGGAACAGTTCTTGCCATTAAAAGCTTTGAAAAGTTGGCATCAAGTCTCAAAAAAGCCAAAAATAAAGTTTGTGAATAAAATTACAGCACTGATTCGGTCCTTAACACTGGTAGGAGGAAGAGAAGACATGTAAGATGGTTTGGGAAACTCAACAGCTTTTTTTTATTATTGAAAACACCTTGCATAATCGCGACTAGCAAAAGCCATTGCAGAAATTATCGGGCCTAAGGAGTAAAAGGACAGTGAAATAAATGTTCAGCTGGTAAACTGTAGAACTACTGCAAACTTTTGGGTTTAAGGTGCTTTTATTGGGAAATAAATTCAAGTAAAATAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3EWY9	Mucin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
B3EWZ3	Coadhesin (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000017 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19028 all species →	TSP1_spondin	Spondin-like TSP1 domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR044004 all species →	Domain	Spondin-like TSP1 domain	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906 all species →	PROPERDIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for amic_s0319.g13.t2 in Acropora microphthalma.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01335	CFB; complement factor B	EC:3.4.21.47	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.