Gene detail

Detailed information of amic_s0320.g2.t1 in Acropora microphthalma

Genomic Location: sc0000320_pilon:48713...57485
NR annotation: XP_015773695.1, PREDICTED: paired box protein Pax-3-B-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0320.g2.t1

CTGACGTCAAAACGTTCCCGCCCACATTTGCCCTTATAACTTCCCCGGTAAAAGTCACACACAAATGAATTTCAAAAAACGCCGCATCGTGGCGAGTAGGACGAAAGCAAAACTGAAAACAAAGGCTTCAAAACATACACATTGGCGGAACTCTTGGAAGAAGAAATGCAGAGACCGGGAATAATGGAATTCATCGATACCAGCACTTCGGCAGGTCATGGAAAATTTAACCAGTTGGGTGGAGTATTTGTGAACGGAAAGCCACTTCCAAACTCTGTTCGACAAAAAATTATCGAAATGGCAGAGCTTGGAATCCGCCCGTGTGACATCAGCAGACAACTCAAGGTTTCACATGGCTGCATTAGTAAACTTCTTTCTAAATACAACGATACCGGTTCGTTTGAACCCGGACGGGCACAGAGGAAAACATCTAGGGACGTGAGCTCCGAAGTAAAGAATAAGATCGAGGAATATCGGCGAACAGCGCCGGGGATCTTCTCTTGGGAAGTGAAAGAAAAGCTTGTGGCTGATGGTTACTGCACAAAAGAAAATCTTCCCCCCCTCACAGTTATCAGCAGGTTGTTAAGAAGGGCAAAGTCCACTGGAAGTGCTCTAGAAATGTGTGAGGCAGAGCCAAGTGATGTAGAAAGTGAAGGAGACACATCTAGTTCAAACAGTGGAGAGTCTTCAGCATCCAAGCCAAGACCTAAACGGAGATCGTTTTCCATTGCAAATATTCTGAGCATTAACGACGAAGCAAGGACGGTTAGTGAAGAAACCTCGACGCCTCCTTCCTCTCCACAAGAGAATGGGGCTGCTGCAGCATCAGAGGTTAGTGCTGATGATATTGCCAGTATTACCAACGGAATGCAGAAGTTAAGACATTACCGAAGGCGAAACCGAACCAAATTTACACAACACCAGATACAAGAGTTAGAAAAAGCCTTTGAAAAAACACAGTACCCTGACGTCTTGACGCGAGAAGAACTTGGAGAACGATTGGACATAAGCGAATCCAGGATTCAGGTATGGTTCTCAAACCGCCGATCGAAAGGCAAACGATCATCTCAAAAAACGGACTTGAACACCAGCGGCGAACAAGACGGAGCAACAGCTGAAAGAGGCGAAAGATGTATCAACCACAGTCGCATATTCTACCCTCCTTGTACTCCTGTTCCGGTGATACGTTACGCGCCTTACCTTCCAGCGGTACAATCAGCCTACGCGTACATGTATTATTCACCGGGTTATGACAGCAGTTAATCGAATATGTAAGCAATCACTCAACACAAAATATAAATACAACACGCTAAGAGTGTTCATCGAAGTACATTTCAGTGGAATATTAATAACTAGCGTCAACATTGAAGAACTGATTATAGCATATTGTGTAGCGTCAATTAATAACTTGATAATTTTATAAATGGCAAAAGGGATCAGCGCTTAGCAAGACATGTTTCTGAGCAACCTGTCTTCAAGTAAAAAAAAAAAAGAACCTGTGGAGAACGGGCAATCTTTAAATACGAATTCGTGACTTATTTTCATCTCCTCTGACCGCTTGGTTTTCAATAATTTTTCAGGAATCAGAAATATGTCGCTTATCTTTGTTTTGTAGAATATCAGTTTCTACATTGAACCCCAAGACGCCTACGCTTAGGGATTGCAGAAATCATCGAAAGAAGGCATGCTTCTCATATCCTGCGATGAGCTCTCGTTTATCACTTAATAGAATAAAAGGGCATCGTTTCATGAATACTGAGATTACAGCTAATCTATCATGACAGCGCTTGTGTTTAAATCCGTTTACGGTTTGCCCTGATTATTTGTTACATCACCATGCAACTAAAACTGAAGCTGGGGGTCCAGTAGCAATTAGCCGCTAGATTAAGGCCCAGAGCGGTCATAAGTGCAATATGAAGTTGCTAGGTTTTTTTTCAATTCTGTTTCTCTGCTACGTGCAGTTGTTTTGTTATGTTTTTCGTTGAGTAATACCGTTATATATTGAACAATGTTCAAGGTTCGCGAGAATGGCACGTTTGCAAATACTCTTGCTATACAAATTGTACTTTGTTCATTTACTTCTGGGCTGAAGGCTGACAACAATGGTTGTCCGTTAGGAGCCAGATAACGCGAGTGAGGGATCTTGACTTCGTTCAGTTTCAGTGTTCTAAAATAACGTTCAGTGTAACGGTCAAATGAAGTGAAACACGCTTGTTGTCGCTTTTTCGCTTGAATCTCCTTTTGCCGCTCAAACGACATAAATCATGAGATGACAGTAAACCATAGAACGCTTTTTTCCTAAAATCATGTAAACAAAGCTTTAAATGATATTGCATGCAGTCATGTACAGAAATACTGACTTTCAATTTGTTTCGGCGAGTCAGTATAATAATTCAGTCTCCGAAACGAATAAGAGAAACGATAACGAGCCTCTCTAAGAGTTCGTTGAAGTGACATTATGTAAATACAATTAAAGTTATGTCGCCGTTGCAGCACTCGTCGCCATTTCGCTTTTTACTCAACGAATAATTCATTACAGGGAGCAATTGGATTTTAGCATTGTCACGGGGTCGTAAACAAATTGCCTATCAAAACACACGAAGCTCGTAATGAAGAGTGTATAATCCAGCGGATTTGTTGTCCGAGAAGGAAGTGTTGGAATGTATTCACGTTAGAACAAAGGGTGAAACCATCAAACGAACGTAAAGACGACACATGACAGATTAAACGAAGTGATCTGGATGTACTTTGAGATTACAGTTCGCCGAGAGGTATCATCATTTGTCACCAAACACCTGTTCACTGAACAGAGAAAAAACACAACAATGGCGTAGCAAGCGAGCTAAGTAGCCGCAAAATGAAATTGAAAATGATATCTGCGGCATTGCTGTTGACAGTCTTGGGCAGTGCTTCAAAATGTGACTCTGCATTGGTGACAGATTTACGACATTAAGATTATATTCAATTAAGAAGAAAGGAACAGGACAAAGACTCTATAATTCAATAAACAGGCACTTTGAAACAAAGTTAAATTTAAGAAGATCATGACCAACACCAGAAAATCGCCTGGAACCTTTTCTCCTCAAGAAAGTTGCCTCTGTAATTACTCGATTCTTGGGTCAAAGTTCACCTACCTTGAACGTGAGGGTTGCTTCGAAACCAGTAGAAAGAGTGGTCATCTGAGTCAGCAAGAGAGCCAAATAAGTTGACAAATCCTACCGTTCGATCACACTTCAAGGGAATGAGCAATAATGCTGAGCTTGGAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0IH87	Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3-b PE=2 SV=2
Q645N4	Paired box protein Pax-3-A OS=Xenopus laevis OX=8355 GN=pax3-a PE=2 SV=1
P23760	Paired box protein Pax-3 OS=Homo sapiens OX=9606 GN=PAX3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000410 (this species only)
Transcription factor family	Homeobox · all TF in this species
Transcription factor family	PAX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR043565 all species →	Family	PAX family	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636 all species →	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09381	PAX3_7; paired box protein 3/7	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.