Detailed information of amic_s0324.g22.t2 in Acropora microphthalma

Genomic Location: sc0000324_pilon:361536...368398
NR annotation: XP_029206666.2, LOW QUALITY PROTEIN: U3 small nucleolar RNA-interacting protein 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O43818U3 small nucleolar RNA-interacting protein 2 OS=Homo sapiens OX=9606 GN=RRP9 PE=1 SV=1
Q91WM3U3 small nucleolar RNA-interacting protein 2 OS=Mus musculus OX=10090 GN=Rrp9 PE=1 SV=1
Q9P7C0Uncharacterized WD repeat-containing protein C2E1P5.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC2E1P5.05 PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004387 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR039241
all species →		FamilyRibosomal RNA-processing protein Rrp9-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19865
all species →		U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0030515
all species →		Molecular FunctionsnoRNA bindingInterproscan
GO:0032040
all species →		Cellular Componentsmall-subunit processomeInterproscan
GO:0034511
all species →		Molecular FunctionU3 snoRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0324.g22.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP