Gene detail

Detailed information of amic_s0327.g6.t1 in Acropora microphthalma

Genomic Location: sc0000327_pilon:80296...83211
NR annotation: XP_029207474.2, selenocysteine-specific elongation factor-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0327.g6.t1

CTTCAACATCGGAGTTCTTGGCCATATTGACAGCGGAAAAACCGCTCTTGCTAAGGCTCTGAGTTCGACTGCTTCAACTGCATCATTTGATAAAAATCCTCAGAGTAAAGAGCGTGGAATCACGCTTGATCTTGGCTTTTCCTCATTCCGGGTGCCAATGCCCGAGCATTTAAAAAAGTACCCTTATGAGGTTCTGCAATTTACACTGGTGGACTGCCCAGGCCATGCATCTCTTATTAGAACTATTATCGGCGGCGCTCAGATTATTGACATGATGATGTTGGTAGTGGACGTCACTAAAGGAGTGCAAACACAAACTGCCGAGTGCCTTGTCATTGGAGAGATTCTTTGTGAGAAAATGGTTGTTGTTTTGAACAAGATCGACCTTCTTAAAGAGGAAAAGAGGAATGCATTAATAGAAAAGATGAGCAAAAAGCTGTCAAAGACGTTACAAAACACCAAATTTGTAGGTTCGCCAATCCTGGCCGTGTCAGCCAAGCCTGGAGGACCGGAGTCTCCTGAGTCAGAATCCATTGGAACCCAGGAGCTTGTTGATTTACTGTCATCAATGGCATATATTCCAAACAGAGATCCATCTGGACCACTGGTGTATGCTGTTGACCACTGTTTCTCTATTCGAGGCCAAGGAACTGTGATGACAGGGACCATCCTCAGTGGCAGTGTTAAGGTCAACGATAATATTGAGATTCCATCCATGAAGATCACAAAAAAGGTCAAATCCATGCAGATGTTTAAAGTCCCTGTGACAGAAGCATCTCAGGGAGATAGGGTAGGAATATGTGTCACACAATTTGATCCAAAGCTGTTGGAGAGAGGACTGGTGTGCAGTCCTTCTACCGTGCCAACAATCTTTGCAGCTATCACAACAGTCAAACACATACCTTATTACAAAGGGGCCATAACATCAAAATCCAAGTTTCACATTACAATTGGCCATGAAACAGTGATGGGCAAACTTCAAGTCTTTGGGTCTCCCCCTTCTCAGTCATCTGATACCTCCTTGGAGAATTCTTTGTTTGACATGAGCCAAGAGTATGTTTTTCAGGAAGCAGTTCTGCAAGGCTCAAAACCTGTTACTGGTTCTGCCGAGAGTGAAAATGCATCGTCTGAAACTACTTGCAGCCCTCTCTCAACACAACAGTGGTTGTTCATTGAATTTGAGAAACCAGTCACTTGCCCTAAGAACTCCTTAGTGATTGGGTCCCGGCTAGACACAGACATCCATCTGAACCTCTGCAGAATAGCATTTCACGGGCGTCTAGTGGTTCCTGTCACAGAAAAGAACTTTGCAGAAACATTGCTACCACAGCTGAAAATTTATAAAACCAAGGCAAAGGAAGGTGTGGTTGAAAGGATGACAGACGATTATTCTGTGATTGCCCACTCACTTTTTAAGAAGGAAACAAATATTGAAAGCTTTGTTGGAATGAAGACAAGACTCTCGTCAGGAGAGGAGGGAATAATTGAGGGTAGTTTTGGTCAAAGTGGTAAAGTAAAGATCAGAATTCCAAATGGATTGTCATCAGATACTGTTCTAAAGCTTTCATCCACTGGGAAGAAGAAGGGGGGGAAGGCAAAGAGTGCTGCCCCAGTATGTACAGCACAGGATACTGGTGATTCAGTTGAACAACTCTCTAAGGCTATCAAAGTTATCCTAGAATTTAAGCGGTATAACTATGATCCTAAGAAAAAAATGGTCCAGTCATAAAAGTGACAAGAAAAAAGGGATAAAGACACAGACAAAGGTTAACATATAAATCTTTTAGTAATAATTAAAATATAAAAATTTGGTGTTATTCAACCCGAATTTGTTAGTAATAGCTGTAGTAGTTTGGTTCTTCAGGAATGAAATCCAGTAGCTTCTTGGAATTAGATCATCCAGTTAAGCATTATCCTTACAAAAACAGGCCTTTGGTTCATTGTCCTCTGTATGGCCAAACCTTGACGTTTTTTTCATTGTTGTTATTATAGTTAATATTGTAATTCCAAAGGCTATTCCATAAATAGTGTTTGCAAGAATTTGTAAATGAAAACAAATATCACATCACTCTTTCAAAACCTAAAGAATTATTTTTAACATATTACATTCAATTCATCAATATCCCAGGTGAAGTTCACCCTTTTATTTGCTCTTTGCTTTTCTTTCCTCTAAAAATGAAGATTGCTTTCTGTAAATGCAATGGTGAGTACTGGTTTCTTAAATATGGCCAATGCTAGAGCAAACCTTCCAATAAATTATTATTTTGCAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57772	Selenocysteine-specific elongation factor OS=Homo sapiens OX=9606 GN=EEFSEC PE=1 SV=4
Q9JHW4	Selenocysteine-specific elongation factor OS=Mus musculus OX=10090 GN=Eefsec PE=1 SV=2
B4S5M9	Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) OX=290512 GN=tuf PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007862 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21131 all species →	eEFSec_4th	eEFSec C-terminal RIFT domain	Domain	Interproscan
PF21208 all species →	euk_SelB_III	Selenocysteine-specific elongation factor, eukaryotes, 3rd domain	Domain	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050055 all species →	Family	Elongation factor Tu GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR049394 all species →	Domain	Selenocysteine-specific elongation factor, C-terminal RIFT domain	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR049393 all species →	Domain	Selenocysteine-specific elongation factor, 3rd domain	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43721 all species →	ELONGATION FACTOR TU-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001514 all species →	Biological Process	selenocysteine incorporation	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03833	selB, EEFSEC; selenocysteine-specific elongation factor	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.