Gene detail

Detailed information of amic_s0328.g7.t1 in Acropora microphthalma

Genomic Location: sc0000328_pilon:234216...246098
NR annotation: XP_015776282.1, PREDICTED: excitatory amino acid transporter 1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0328.g7.t1

ACAAAATGCTAATTTGTAATGTTCATCCACGTGTGACAATAGCCGTCTGTGATCACATCAGTTTAGCGCCACTCAAGAAAGAGAATCTGCAGACATGGCAAACAAATTCCGTGGAACTGTTGGTAGAAGCAAAGGCTTCTGCAACAAATGTTGCCAATCATGTTTTGGGTTTGTTGTGCGAAACTTGCTCATGGTTTTGCTTGTTCTTGGAGCTACCGTTGGATTTGTGATCGGTGCACTAATAAACAAACCAGTTCAGGAAATCGTTGCACCTGAAAAACGAGCCACAACTTTAATGCTGATTGGTTTCCCAGGAGAATTACTGATGAACATGCTGCAGGTTATCATTCTTCCACTTATTGTAGCTAGTCTTATCACTGCTGTGTCTCATTTGGATTCCCGATCCACGGGAAGAATCGGTCGAAGAGCTCTTATCTTTTACTTAATCACCACGCTCTCAGCCGCCATCTTGGGAATGATCTTAGTTTCGTCAATTCGACCTGGGAGAAATGACGAACCACAAGGATCGACTGCGAAGCCAGACCCGTACAGAAATCTAGACTCCTTTTTAGATTTAATCAGGAGCTGTTTTCCAAGCAACCTTGTCGAGGCGACATTTCGTCAGAAAAAGACACAATACAGAAAAGATCCTGGGAAATATGAGCTGTATAATGTAAGCGGCAAGAATCCGATGTCACTGGGAGAAAATGAGGAGATAATCCAAACCATTTTGTACAATGCTACATTCAACATCACAACTGTATCTAAAGAAATATACCCAGGCTCAAATACAATACCGATTGGAGTTGGTACAAACCCAAGTGGAGGCATGAACATTCTGGGCTTAGCAGTGTTCTCTATTGTTTTTGGAATTGTTTTGGGGAGAATGGGAGCAAAGGCGAATCCACTAAAGAAGTTCTTTTCTGCATTGAATGATGCCGTTATGATTCTTGTGACTCTGATTATGTGGTACGCACCAATAGGAGTCTGCAGTCTGATTGCCCAACGGGTTGCCAGTATGGTGGACATTGGAGGTGAACTGCGCAGGCTTGCTCTGTTCATCGTGACAGTGTTGGCTGGTTTATCAATCCACGCCTTCATCATTCTTCCGCTGATTTTCTTTGCTGTGCGAAAATCCAATCCCTTTATTTTCATGTATGGCATGAAGGATGCTTTGATGACTGCATTCGGGATCAGTTCCAGCGCAGCAACTCTGCCCACAACTATTCGTTGCATTGAAGAAAACAACAAAGTGGATCCACGCATTAGCAAGTTTGTTTTACCGTTGGGAGCCACAGTTAATATGGATGGGGCTGCATTGTACGAGGCTATTGCCGCTATTTTCATTGCCCAGCTGAACAATTACGATTTGCCAGCAGGAAAAATTATTGCAATATGCATTACGGCAACAGCTATAGCGATTGGCGCTGCTGGTATTCCATCTGCGGGTTCTGTTACCACCATCATTGTACTGCAAGCTGTCAGTCTACCGTTAGATGACATTGGACTTATAATGGCTGTTGACTGGTTCTTAGATCGCTTCCGCACCACTGTTAACGTGCTAGGTGACTCCATTGTCGCAGGTGTAGTAGAGCACTTATCACGTGATGACCTGAAGAACTTTGACGACTACAATGGCATTATGAATGAGGTCGTCCCGCTAAGCAACCGCGACGAATCCAGGGAGCTTGATGAAATTGCCATTACCACAAGATTGTAGTCTTCCTTAATCGCTCAGTTAAGGAACCCATCAGATGGAGCCTGCATCTCCCATACAAGCCCTTGGAGTCATGCTTTTCCCGAGTAGATTTATAAATAGAACGATTCCCTGGGGAGGTTTCGCGCGCTGATAGAGGAAAGAGCCAATGAAAATAGAGAAATGACAGCAGGCAGCGAGCGCATTCATGCGATTCAAGCGCATTACAAAAGAACATGGTTCTATTTATAGATCTACTCCGGAAAGGGTTAACTCAAGAAATTAATAGAGATGGAGACTCCATCTGATGAACTCCTGCTCAGTTACAATGGCGTTGTAACTTTGATTAGTTTATATCTCAGTGTACTTTTTTCAGTCTACTTTTTTGCAAGGATATACTCATAAGTTTGACAACTAAACAAAAGGACATGCGCTTTTATATTTGCTTCCTATTCAAGACTTGTCATAAATTGAAGCAACATCAATCAAAAAATGGCGTTAAGCAAACTATGCGAGTTTCCTGTAAACTGTCCGTTTTTTGATAGAATCTGTCCCTACCAAAGGCCGTTTTTATGTATAACGAAATTAGAATTCTTTGTAGTGGTTGCAAGAATCAATTCAAATATTCTCTATCCAAGCATTAAAAGAACAATAACACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57321	Excitatory amino acid transporter 1 OS=Ambystoma tigrinum OX=8305 GN=SLC1A3 PE=1 SV=1
P56564	Excitatory amino acid transporter 1 OS=Mus musculus OX=10090 GN=Slc1a3 PE=1 SV=2
P46411	Excitatory amino acid transporter 1 OS=Bos taurus OX=9913 GN=SLC1A3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000461 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375 all species →	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018107 all species →	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan
IPR036458 all species →	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR001991 all species →	Family	Sodium:dicarboxylate symporter	Interproscan
IPR050746 all species →	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958 all species →	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005313 all species →	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015175 all species →	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015501 all species →	Molecular Function	glutamate:sodium symporter activity	Interproscan
GO:0015813 all species →	Biological Process	L-glutamate transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05614	SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.