Gene detail

Detailed information of amic_s0330.g3.t1 in Acropora microphthalma

Genomic Location: sc0000330_pilon:39189...42785
NR annotation: XP_029208910.1, protein atonal homolog 8-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D2CLZ9	Transcription factor atoh8 OS=Danio rerio OX=7955 GN=atoh8 PE=2 SV=1
Q96SQ7	Transcription factor ATOH8 OS=Homo sapiens OX=9606 GN=ATOH8 PE=1 SV=2
Q99NA2	Transcription factor Atoh8 OS=Mus musculus OX=10090 GN=Atoh8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008108 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050359 all species →	Family	Basic helix-loop-helix transcription factors	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19290 all species →	BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007423 all species →	Biological Process	sensory organ development	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0061564 all species →	Biological Process	axon development	Interproscan
GO:0070888 all species →	Molecular Function	E-box binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0330.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.