Gene detail

Detailed information of amic_s0342.g12.t1 in Acropora microphthalma

Genomic Location: sc0000342_pilon:196248...203515
NR annotation: XP_029180245.2, homeobox protein PKNOX1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0342.g12.t1

TTATGCAAAAACACGTAGGTTGGCGCTGTCAATCAGTCGAAGCAAGGCCGCACCAAAAGAGTTTTTTGACGTTGACGAGTGACTGACACCGTCGCCGTTCCATCGCCTCGTGCATTTCTTTTTTAATAGTGACCAATTACGCGGCCAAATGGAAGGGCTTGCAAATCGAGTGCAGCCACATATGCTTCAAGCCCAGCAAAACTCTGCTGGTACACCTCATTATGGAGGTATCACTATTCAACAGACACAGGCGGAGAAGATGCCACCAACTTACGAAGAAGCCCAACTCGCTGTCCAAGCCGTTGATATGCAACAGATCACAAACATGGAAGCGGAAAAACAAGCAATCTACCGCCATCCGCTGCTTCCACTTTTGGCAAGATTATTCGAAAAGTGCGAGCAATCGACCCAAACTTGCGAAGCGACTCCTGCCAACAGTTTCGACAACGAAATAAAGAATGGCATTTTGCAGATGAATCGAGAAGGAAAGCCATTTTATACCGATGATCGAGAGCTCGACAACTTGATGGTGAAAGCAATTCAAGTTCTCAGAATACATCTTCTGGAGCTTGAAAAGGTCAACGAACTCTGCAAAGATTTTTGCCAGCGTTACATAGCATGCCTCAAAGGCAAGATGCAGAGTGAGAACTTGTTGCGAAGCCCGTTGCAGACATCATACTCTCCTGCAGTTAATGTGATGAACACAAATGTTCAACCACAGACACCAACCACTCCAATTCAAGCACAACAGACAGCATTTGTCCCACAACCACAGCAACAAATTACATATTATGCAACTCCTGTGGTAACGCCATGCACTGTTGCAAATGTCACGCCAGCTGCATCTGTCATAGGTCCTCCTCTCCAGCAACAAGTTGCAACAGTAACTTATGTTCCCCAGGGGGTAGCCCCTGGTCAGCAAATCGTCATTGCACAGGTTCCCCAATCAGTAACACAGCAACCTGTGGTGCAGACAACAGTGGCATATAGTTCAATACCTTCAACAGTGACATATACTTCAGTATCGCCAAATGTAACATATGTAAACGCTCCGACCATTGAGACCATCACACCAGCGAGACCACAGACGGCGTTTTCTGGAGATGAGTCACCAACAGAGATCACAGTTCCTTCAAGTGTTCCGCTGCCCGCTCTCGACTCCCCGACAGAAGTTACAGACAAGAAGAGAACAAGAAGAGGGGTGCTTCCTAAACAGGCTACGAACATCATGAAGACATGGCTTTTTCAACATCTTGTGCATCCGTACCCGACAGAAGACGAGAAAAGAGCCATAGCTGCGCAGACCAATTTGACGATACTGCAGGTTAACAACTGGTTCATCAATGCAAGACGTCGCATTTTACAGCCCATGTTGGATGCCAGTAACCCAGAAGGACCCAAAGCTAAAAAGTCCAAAATCCAAAGTAGACCAGCACAGAGGTTTTGGCCGGAAAATTTAGTTCCAAGTCAGTTTAATACCATCCCTATTGCACCAGCCCCAGTCACTGTCCAGGCCGTGATGCAAGGAGCTGTTCAAATGCAGCAAGTTCCTCCTGGTACTGCGGTAGCTGTGGCACCTGGCACAGCACTACCAACAACTATAACCATACCAAATGTACAAGGGACCACCGTCATCCCAGGAACTGTTACTCTGcagcaacaacaacaacaacaaACAGGGACACCATCCACAGTGGTCGTGGTCACTTTACCACCTTCAGGCAGTCACATAAATACTGTGACAGCAGCGGAAAGTTCTTCAGTGGACACAACACGCCAAACTATAATTGCACCAGTTGTATCTTCACATGTGGAATCAGTCGCAGTTAGTAGTCTTTCTCCAATGTACAGTAACATTCAACAAGGTAGTCCATCCCTGCAAAATTCACCTCTACCAACCATGGTTCAAAATGGATCTATGGGGGGTAGAGAGGGTAACCTTGTTGGCTCCCCACACCACATCCCTGTGTCAAGTGTTAGTATGTCTGGGGTGCAAGACAATCTAGTTGGTGTCACTGCAATTTCATTGGAGAATGCTGCAGTGTCTAGAAGTCGTGTAAACTGATAATATACTGCTAATGTTTTGCTGCTCCATGACAGTCCTTTTCGACAACATGTAATCAATCATCCAATGGCAAAGTCCTAATCAGGGTCCTTTCTAATCTGCGACTGGTGGTAAAAATCAAGTTTGTTTATAGGGAGATATACACCTGCTCTTAACCCTGTTGTCTTACTCTCGATGAATGATTAAGATTGACGTTCTTGAGAAAGCTTGCAGAAAATAATGCAAAATTTTACGCTTATTGAATTTTAATGTTATTCTTAGTGTGAGTAATTGTGGTTATCAATTTTCAATGTGTGTATTGATAAGACCACAGCAGACATCTTCAGAAGGTGCATTGGTTTTTTGCTACTATACTGGTTTTGTTCCTACGATTTTATGATCATTGATCGACAGGTGTTGTTGAGTTCCAGTTGTGCTATTAATGATTGAATGATAGCAATCTTCAAATCAGGTTAATGTTGGGTTTTAATTTTTTGTTTTTTTGGGTGAGAGCTTGCATTAATGATAACTGAATGTTTTTAAACAGGAAGTTACATGTTCGATGATGTAAAGTGTCTTTGCATCATTATTGTAAAATATGAACTTAAGAAAACAACCAAGTGGGAGGCATTGCCAATGTGAGGCATGCCTTCGCGTCAATCTACTCTGTCCACTATACTGGCCTCAAGGTCAAGACATTATCTTCTTTAACCAAACCAGTATAATGCCAGTTGTTGACATTTTCACACATACCAAGAGTTAAATTTTATCTTTCTGAGGTTGTCTTCTAAAGTAGGCGTTCTTTGTTTGTTTTTTTTTTCATTGCAGTTAGACTGACTTTACACAGATTTAATTGTCATCAGTTTAATTTGGAAATATAGTTTTTATAGAGAAAATACTAATGTAATGTAGTTATAATTTTATATTGTACATTATTTTAAGATGCTGTAAATGGCAGCCGGTTAAATTATTAGCAACATAAATATTCAAGATATTCGTGTAACTATATTTTTCACTGAATACATGAAACATAAATGGGAATGAATAATGAAATTAATACCTTGATGAAATGACTAGTATTGATTAAAAACCTATACATAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96KN3	Homeobox protein PKNOX2 OS=Homo sapiens OX=9606 GN=PKNOX2 PE=1 SV=2
Q8BG99	Homeobox protein PKNOX2 OS=Mus musculus OX=10090 GN=Pknox2 PE=2 SV=1
Q5R6L1	Homeobox protein PKNOX2 OS=Pongo abelii OX=9601 GN=PKNOX2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001133 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan
PF16493 all species →	Meis_PKNOX_N	N-terminal of Homeobox Meis and PKNOX1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050224 all species →	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR032453 all species →	Domain	Homeobox protein PKNOX/Meis, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850 all species →	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24891	PKNOX; homeobox protein PKNOX	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.