Detailed information of amic_s0342.g5.t1 in Acropora microphthalma

Genomic Location: sc0000342_pilon:99036...101731
NR annotation: PFX22151.1, Retrovirus-related Pol polyprotein from transposon 17.6 [Stylophora pistillata]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000010 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02023
all species →		SCANSCAN domainDomainInterproscan
PF17917
all species →		RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003309
all species →		DomainSCAN domainInterproscan
IPR041373
all species →		DomainReverse transcriptase, RNase H-like domainInterproscan
IPR051320
all species →		FamilyViral Replication and Maturation PolyproteinInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR038269
all species →		Homologous_superfamilySCAN domain superfamilyInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128
all species →		Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33064
all species →		POL PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0342.g5.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0342.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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