Gene detail

Detailed information of amic_s0347.g4.t1 in Acropora microphthalma

Genomic Location: sc0000347_pilon:33066...46432
NR annotation: CAB3992172.1, jerky homolog-like isoform X2 [Paramuricea clavata]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0347.g4.t1

TGGACTTGCAACCACACACAAATAGAATACCACTCTGAGTTACCAAGGACACTGCCACATTATGCCGCAAAAATATGCATCATTCTAACAATGATACCACAACAACCCTGCCATCACATAAATTGCAAAAAAACATACCTTAAACTCTACAGTACCAATGACAATAATTGCATTAATTTGACTAACAATATCAAAGTAGCAAAATTTAAAATATTATTTTGCCTTTTTTTTAAATTCTTTTTCAGAGGGAGACACATCTTTTAGCACACTATTCCAACAGTTTCACAAGGCTCTCACCAAATACTACAATGATGGGGGACAAAGTCTTTATGACCCCTCAAAGATGGAAAGGTTTTGTGAGGAGCATGCACCCAGAATGTTTGAAGATATTTATGATGCAATATTTAATGACAAAAAGCAATCCCCTTCAGAAAAAAGAAGAAAGCTTCAAAAATCAAGGGTTGTGGCAGTCCTGCATAACCTGAGTTTCTTTCGAAACCAGGTAGTTTACTGTAAATTGCCAAATATTCAAATAAAGGTTATTCTGGAAAATAAAAAAGGGGAAACATAAGTGAAGGGAAATAATACATACTCAAGCACTCACTAGGTGGGAACCAACATAACAATTAAACCTGGACTCAACTAAATGTCTCACATCATCATAAAAATTGAACAAAAACAAATTGTGTAAGATCAAACAGAAGAATATCAAAAGCACGAAAAATACTCCTGATATACACATAATACAGGGAATGAGAATAAAAGTAATGCCCAAAGTCTAAACCAGGTAACTGTGAAAGAAAACTTCAAATGACATGTTACAAAGCACTTATTTCACATAGGAGATCACATTTATGCACCACTGTATATCAGTATCTAAGAATCTTGCAAATTAAaaaaacagcaacaacaacaacatacacaaaaaAGTTTGCCTTCAATAATAAAATAGAAAAGACTAAAAAATCACGCCTTCATAGTGCCCTTGTATAACAATATCAAAATATTTCTGGTCAGCTATGAGTACTGCATGTTCACTGTATATAATCATTTATTCCTGGGTCATTCACAGAACCTTTTGGCTGTAGAAAAAAATCCATATCATGCTGATTGAAGATGACAACCATTTCATACATGCACCACAACACCCAACTTCCAGTACCACAAGTACTGCCTGGCACATGTGCACTGGCCTCATGGACATACAGCCATCCATTTCAAAGTCAAGGAGCTACAGAAAAGGGTCATTTCTCGCTTCGCAGAATTAAAACAACAGAACCGCGCACGCACCAATACTGAATGAAAAAATAAAAGAAGTGTGCTGCACGAGATGCCGCCAGACAACCAATCCATCCTTCAGTACGGAAAAGAATTCTCTCCATAACAAAAAGGCTTTTCTAAAGCCACTCAAAATAAACAAGGCAATAACCAACAGTCGCAAACACTTGTTGTTTATAGTTGAAACTCAGCTGCTCTCGTTGTAATTGTCAACTACTTTTTCGTAGGTAGCCAAAGCACCATGTTTCGAGTAATAGAAATGACAAACTGTTAAATTCCAACTTAGAAACATGTCCTGACGGATATGGCTAGTCAGCATAATGCGTGTAACCCGTCCAACCTTTCTGTAAAGGCAATGAACGATGTTAGGGTGGGAGGACTAAGCATTCGAAAATCAGCCAAAAAGTGGGGGATTAAAAGGACCACTCTTCAAGATCGCTTGAGTGGTCGGGTTGAGATCAACAGACGCAGAGGCCCACCTCCAATTCTAACAAAGCAGGAAGAAAACCAGTTCACAGATTCGCTGATTGTAATGGCAAACCGGGGTTTCGGTGTGTCTAAAGAGTGTTTACTTAAAACGGTCAAAACATTCCTTGACAAAGACGGAAGAAAAACCCCTTTTCAAGACAACAAACCTGGTAACAAGTGCTTTCGCTCTTTTGTTAAGCGAAACCCTCGGGTAAAATTACGAAAGTCACGACCTCTTGAAAAGAAAAGGGCTAAGATCCCGAAAGAAGATTTGCACGCCTGGTTTAATGGCTTCGAAAAGTTTTTGGTTGAAAAAAACCTTGCAGATAAGCCGTCGCAAATCTGGAACTGTGATGAGACCGGTTTCGATATGCAAGGACGAGCAGGAAACGTCATTGGCCCATCTGACAGAAAAGAAGCGCCGTTTAGCGTCCTTCCGGGAAGCCAAGAGCATGTTACTGCCTTACCATGTTTTAACGCATGCGGCCAGTGGATGCCCCCATATTTCCTTTTTCCTGGAAAGCGCATTCCCGTTACTTACAATCCGCTAGAAGGAGGCGTCGAAGGAAGTGTCTTTTCTATGACAGAGTCTGGTTATATGGACACGTCAACATTTTATATGTGGTTTGCAAATCACTTCATACCAAATTTGCCACCAGCAAGGCCTGTTGTCTTACTTGTTGACGGTCATGATTCGCATCTTAATCTCGAGTTATTCCAACTAGCAGAAAAGAATGGAATCTATCTGTATTCTCTTTTACAAAATGTGACACATCTCGTTCAGCCCGCTGATGTCGGTCTATTCGGTCCAATGAAAAAGAGTTGGGACAAAGCAGTACGACTGTTTTCTCAAAGAAACCCAAACACGGACATCAATAAGAAAAACTTTTGCTCAGTGTTCAAAGCAACATGGGAAGAAGTTATGAGCCCATCAGTTCTAGTCAGCGCCTTTCGTAAATCGGGTATTTACCCTTTGGACAGGAAGCAGATTTCAAACGAGCGACTGCTTTGCTCTGAGCAATCTTCTTCCGAGACAGGTTCTCCTCAACCAACACTCTCAAGTAAGAACACATCAGGCGCAGTGCAAGCTTTTGAAGCTCTAGAAGCAGTCTTGACGACCCCTTCCAGGACCAAATACAGACGAAGGATGGCAGAAGGCTATGATCTTGAAGGAAGTCCAACCTTTTCTGTTTGGCAGAAGCTGTACCGCGCAACAGAAGATCCAGTCACACCAAGCGAAGCCAACCTGCAAGGAACAACAGCAGCGTGTACAACAACTGCAACACCTTCAGCAAGTACTGCCTCTACAGCAAGTGCGCCTTTAAATACCACAGCATCTTTGACAAGTGCAGCGCCTTTAACAAGTGAGAAACGTAGAACAGGCAATGCAGACGTGGAATGCATTGAATGTGAACAAACTGGGCATCCCTGCAAGAGCTTTCCCCCATGGCCGCCGCAGCATCTTCCAGGGGGAGGAGCGGTAATTCCATGTGCATATCACATTCGAGTTAAAGATGGTAGTGAACAATGCATTCTGGACAAAGTACGAGCAGCGGTGGAGCTTATGGAGGAGAAATGCGTTCTGAAAATAACCTTTGCATAAATTGTTTAACATGTCTCTAACATGATGTAGTTATAAATGAGAAATAATAAAAGAGAATTAATTCC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000242 (this species only)
Transcription factor family	HTH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05225 all species →	HTH_psq	helix-turn-helix, Psq domain	Domain	Interproscan
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050863 all species →	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR007889 all species →	Domain	DNA binding HTH domain, Psq-type	Interproscan
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19303 all species →	TRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0347.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.