Gene detail

Detailed information of amic_s0348.g2.t2 in Acropora microphthalma

Genomic Location: sc0000348_pilon:35706...69014
NR annotation: XP_044172431.1, uncharacterized protein LOC114958691 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0348.g2.t2

ATGTCTGAAGTTACGTACAACGATTTGCTGTATCGCATATGCAATAGACTTGACGAGATCAATGCTCTTAAACATGTACTCAGCATTTGCAGAGGGAAACTACCTCATGGAGCTAATGATACTATTCGTGATACGCGCTCGTTGTTTGAAAACTTGGAAGAGCGTAGTCTTCTTGGGGTCGATTCTCTGCAGCTACTTAAAGATATTTTGCAAGCTGTAAAGGAATGGGACCTTCACGAAAAAATTGTTAAGTTTGAAAGTTTAAGAAGAGAATATTCGGAGAAGTTACGTGAAACGGTCATTCGTGTACTCGAAGAACTCAATGATATGGAAAGGCTGATGTCTGCCGTCGGTAGAAGGGAGATACCAGAAGAAAGACAAAACAATGTTCGGTCACTAGTGAATTTTCTCGGAACCGACTGTCTACATTTATTTAGAGGAATTTTCAACGAACTGAATAACGATGAACTACGGACGGCGTTGGAAGAATTTCAGGATCATCGAACTCAATACGAGGCGTTTGAAAGGAAAGAAGCTCAACGAGAAGCCACTTGGGCAGTGGTAAAAGCGTTTGGTGGACGTATAAAAGCAGCAATTCAAGTCCACTGTAATTGGCAAAACGCCTGTGGTACTTTATTTGCCATTGGCATAGGAAGGATGCTGTTGGAATGGCCTTCTGCTGCTGAATTTTTTGAATTTTTCAACCGTGAAATTTTACCTGCAAAAGCTAAATTGGTTGCCCTAAGTCAGGGGTCTGTTTGCTTCACGGTTAAGGCCGAAACTAGTCTGGCTCTTGAGGAATTATATGAACGATATAGTACTGGTAGACTGCAGAGAGATCTTCAAGAGTTCTTGGTGAAAGATGACATCAGAAAACTGGCGGATGGAGAAGAAGTGATAGTACGTGTACACGTCGATGAAAAGGAATTCGAGGAAGCCCGTAATGATCTGGAAAACGTGGATACAGAAGGACCTTGCAAAGACTCAGAGGATGCAAaagaagctccaaagggctccttaatttcgacttccagcgagaaattaaaagtgactcttttagcctacgaatggggatctgctgaaggagacttgtcaacaataaccagagagcttgccattcaattggcaaaggatgacaatatggaagtctgcatgtacctcccagcgttcagtaacgaagataaaaatgcggctgataagtgcagggtccatctacttaaggcagaggagatgcctgcgtatgatccgatagactggttggcctctgttccaaataatcatcagatgaacgctgtgattggccatgggatcgatcttggtaaacaggtaccgcacataaaacaatcgcgccctgaatgcaaatgggttcaagttgttcatactgaccctgaagaaaatggaatgtttaattcctctgatgatgcagctgccaaaggtaaaaaaaagcatgacgctgagataaaactctgccaaaaagcggatcaaattgtggcaattggtcccaaattggctgctacctactcccgtaaatatgaagggaagaaagtcctcgatgtcaccccgggcatcttttcagagtttgctaatataaaacaaggtattaacgaaagaacagaatttcaggttttcatttttggacgtggcgatagtgaagattttcacttaaagggatacgacattgctgcccatgcagttgctgagctgaaagatgaagaaccccctgtcaaacttgtgtttgttggtgcaccaaatggaaaagaggaggaagttaaaggaatgttgcttaagacaaagatttcaccccgtcaacttatcgtgcgcagtgcaaaggaaagagggcagccttctcagaagtttcatcaggctgatcttgtcataatgccctcaagaaccgaaggttttggtctagttgcacttgaagctttgtctgctggcctacctgtgctggtcagccataactcaggcctccgagtggcattggaaaaggttacctttggtagaaacgttgtggtaaattcagaagatccagcagagtgggcaaaggcaatccggggagttcgtagcaagtccagaaacgtacaattgaaggaagcccgtgatcttcgtaaaaactactcagagacgtacaattgggaggagcaatgcagtggactgataaagaagatccgtgaacttgtaggaactcctacttcattacttagagcgagagaatgcggacaagATACCTTGCAGAACCTACTTCACGAGTTTCCACATTTTGTTAATCGAAAAAATGACGAACTTTCTCTTATTGTGAAGTGTCTTGATCCAAAAAATAAGCAGTGGCAGGGGGTGCTCATAGATGGAGCTCCAGGGATTGGCAAGACAACTCTTGCAACCGAGGCTGCAAACAAGTTACGTAACGATAACAGACATGTCCTTGTTGCGTACATCGACTGCAATGACATTAAGTCTTTCGAATCCTTCTCAGCAACAGTCATTGAGCAAATTTGCCGTTCGCCTGCAGTAGACGATCCAGCTGCCGAAATAAAGAAGCGTTTAATAGCTAGCAAAGATTGTTTTTACATTTTGTATCTGGATAACTTTGAGTGTTTTCTTGAAGAGAATAACAAACAGCAGGAGGATCAACCTTTGACAGCAGCAGCCCCATCTCGTGATTGTAGAGAAAGAGTCATTTCGTTTATTGATGAAATTGCGAAATGCCCGACAAACATCAAGTTTCTTGTTACTTCGAGGGAGAGAGTTCCTTTCTTGCCGATGCTAGCGATGAAAGCGATACATTTGAATCCATTTGATAAAGACGAATCATCTAAGCTCTTGGAAAAAGTACGACCTGACGACAAAATATCAGATGAACAATCCGAAGAACTTTGCGAGATTTGCAGTGGTATTCCGCTGGTACTCCACACTTTGATGTCGTCGCATGAGGATCTGATTGGTCTCATCGACCTTGCTAGAAAAAAGGATCCGGGAGAGAAAGCAGCTTTTTTGCGGAATATGAAAACAGTGCATTGGAAGAGAAAAATAGAGTTTTGCCTGGATGTTTGCTTCGAAAGATTGACACCCCAAGTACGACTGACCTTACTACGTTTGTGTCTTTACAGAGGTTTGTTTACTCCAGATAAAGCAGCAAAAATCTTTTGCTTTCCGAGTTCGAGCGAGCATGATCTCGGAGATTATATTTTGGAATTGGGACGGTGCAATCTCTTGCACCTACAAAAATTCCAAGATATAAACAAATATACATTTCTTACGGTCATTCGAGAACATTTCAAGGCAAAGCAAGAATATCGCGAAGAGCTCCAGCATGCTCGTGGTCTGCTGATCGATTACCTCATTTCTTTCTTGAAAGAGACTTTCAAGGTGTTCTTGGGCAAAAATTCAGTGAAATCGGCTATCGAGGAGTTTTTACCGGAGAAAGAGAACGTGATGCAGCTGGTTGAATGGATCAACAAGAATGAAATGGACGAGGAGCGAGTTAAGAAATGCATCGACGTCTTTAATGTGGCAGGAGAGATGCTTGCGAAGATGATGGCAAAGTTCAATTATAGAGACGTTTACGAATCTATGGCTAAGAAAAGTGAAGAAATGGGAGACCAGCGGAGACTGGCTGAATGTCTGACTTCCCTTGGGATCCAGGAAATCTTCAACTGCATATGCGCAACTGGTCTGAATGACGAGGCTATTGAGCGAGCTCGGCCTAGCTTGGAGAAAGCTCATAGGATCCAGACTCACCTTCAAGTCAGCAGGGGTAACAGCCGTGCCCAGTGCCTCGCTAAGCTTGGCCGTTGTCTAGTAAGAAGTGATGACACAGAGCGAGGGAAGGCCATGATTGAGGAGGCGATACGTATCAGAGAGGCCGCAGTCCAAACACCTGATGATCATGAAGAAGAAGGCGGCGAGAATGTCTGCGATGTCATGCTGGGTGCAACGTATAACGACAAGGCAGttgctctttcttttgaaaactgtcatcgagaggctgtgaacatcagaaaaaatcaagtgatgctgatttacacagaaagattgggtgaccatcctttcactgccaccatcctcaacaatttgtccaataatcatcgcgacctgggagaatttgaggccgctgaggagtacgctgaacaagctcgacgtattcggcgcaagttattggcggaccacagagacaccgctaaatctttgtttgatcttggagtggcactgaaagcgaacggaaagttcagagaagcaaaggatttgctagaagaatgtaaaactatgcaggagaaagtggtGAATGATAGCACCTTCGAGGAAAATTTGGAAGAAGAGCTAAGAGATGTTAACGGACTACTTAAAATGCAGCAGTCAGAGGGCCAAGATCGTTGA

Transcript

amic_s0348.g2.t2

AATCACAGTTGCGTGACCAACAGATTCGTTCTTCTTCAATCGAACCCTCAGACGGAAAACGATATTTAGCCGCCAATGAAATGTCTGAAGTTACGTACAACGATTTGCTGTATCGCATATGCAATAGACTTGACGAGATCAATGCTCTTAAACATGTACTCAGCATTTGCAGAGGGAAACTACCTCATGGAGCTAATGATACTATTCGTGATACGCGCTCGTTGTTTGAAAACTTGGAAGAGCGTAGTCTTCTTGGGGTCGATTCTCTGCAGCTACTTAAAGATATTTTGCAAGCTGTAAAGGAATGGGACCTTCACGAAAAAATTGTTAAGTTTGAAAGTTTAAGAAGAGAATATTCGGAGAAGTTACGTGAAACGGTCATTCGTGTACTCGAAGAACTCAATGATATGGAAAGGCTGATGTCTGCCGTCGGTAGAAGGGAGATACCAGAAGAAAGACAAAACAATGTTCGGTCACTAGTGAATTTTCTCGGAACCGACTGTCTACATTTATTTAGAGGAATTTTCAACGAACTGAATAACGATGAACTACGGACGGCGTTGGAAGAATTTCAGGATCATCGAACTCAATACGAGGCGTTTGAAAGGAAAGAAGCTCAACGAGAAGCCACTTGGGCAGTGGTAAAAGCGTTTGGTGGACGTATAAAAGCAGCAATTCAAGTCCACTGTAATTGGCAAAACGCCTGTGGTACTTTATTTGCCATTGGCATAGGAAGGATGCTGTTGGAATGGCCTTCTGCTGCTGAATTTTTTGAATTTTTCAACCGTGAAATTTTACCTGCAAAAGCTAAATTGGTTGCCCTAAGTCAGGGGTCTGTTTGCTTCACGGTTAAGGCCGAAACTAGTCTGGCTCTTGAGGAATTATATGAACGATATAGTACTGGTAGACTGCAGAGAGATCTTCAAGAGTTCTTGGTGAAAGATGACATCAGAAAACTGGCGGATGGAGAAGAAGTGATAGTACGTGTACACGTCGATGAAAAGGAATTCGAGGAAGCCCGTAATGATCTGGAAAACGTGGATACAGAAGGACCTTGCAAAGACTCAGAGGATGCAAaagaagctccaaagggctccttaatttcgacttccagcgagaaattaaaagtgactcttttagcctacgaatggggatctgctgaaggagacttgtcaacaataaccagagagcttgccattcaattggcaaaggatgacaatatggaagtctgcatgtacctcccagcgttcagtaacgaagataaaaatgcggctgataagtgcagggtccatctacttaaggcagaggagatgcctgcgtatgatccgatagactggttggcctctgttccaaataatcatcagatgaacgctgtgattggccatgggatcgatcttggtaaacaggtaccgcacataaaacaatcgcgccctgaatgcaaatgggttcaagttgttcatactgaccctgaagaaaatggaatgtttaattcctctgatgatgcagctgccaaaggtaaaaaaaagcatgacgctgagataaaactctgccaaaaagcggatcaaattgtggcaattggtcccaaattggctgctacctactcccgtaaatatgaagggaagaaagtcctcgatgtcaccccgggcatcttttcagagtttgctaatataaaacaaggtattaacgaaagaacagaatttcaggttttcatttttggacgtggcgatagtgaagattttcacttaaagggatacgacattgctgcccatgcagttgctgagctgaaagatgaagaaccccctgtcaaacttgtgtttgttggtgcaccaaatggaaaagaggaggaagttaaaggaatgttgcttaagacaaagatttcaccccgtcaacttatcgtgcgcagtgcaaaggaaagagggcagccttctcagaagtttcatcaggctgatcttgtcataatgccctcaagaaccgaaggttttggtctagttgcacttgaagctttgtctgctggcctacctgtgctggtcagccataactcaggcctccgagtggcattggaaaaggttacctttggtagaaacgttgtggtaaattcagaagatccagcagagtgggcaaaggcaatccggggagttcgtagcaagtccagaaacgtacaattgaaggaagcccgtgatcttcgtaaaaactactcagagacgtacaattgggaggagcaatgcagtggactgataaagaagatccgtgaacttgtaggaactcctacttcattacttagagcgagagaatgcggacaagATACCTTGCAGAACCTACTTCACGAGTTTCCACATTTTGTTAATCGAAAAAATGACGAACTTTCTCTTATTGTGAAGTGTCTTGATCCAAAAAATAAGCAGTGGCAGGGGGTGCTCATAGATGGAGCTCCAGGGATTGGCAAGACAACTCTTGCAACCGAGGCTGCAAACAAGTTACGTAACGATAACAGACATGTCCTTGTTGCGTACATCGACTGCAATGACATTAAGTCTTTCGAATCCTTCTCAGCAACAGTCATTGAGCAAATTTGCCGTTCGCCTGCAGTAGACGATCCAGCTGCCGAAATAAAGAAGCGTTTAATAGCTAGCAAAGATTGTTTTTACATTTTGTATCTGGATAACTTTGAGTGTTTTCTTGAAGAGAATAACAAACAGCAGGAGGATCAACCTTTGACAGCAGCAGCCCCATCTCGTGATTGTAGAGAAAGAGTCATTTCGTTTATTGATGAAATTGCGAAATGCCCGACAAACATCAAGTTTCTTGTTACTTCGAGGGAGAGAGTTCCTTTCTTGCCGATGCTAGCGATGAAAGCGATACATTTGAATCCATTTGATAAAGACGAATCATCTAAGCTCTTGGAAAAAGTACGACCTGACGACAAAATATCAGATGAACAATCCGAAGAACTTTGCGAGATTTGCAGTGGTATTCCGCTGGTACTCCACACTTTGATGTCGTCGCATGAGGATCTGATTGGTCTCATCGACCTTGCTAGAAAAAAGGATCCGGGAGAGAAAGCAGCTTTTTTGCGGAATATGAAAACAGTGCATTGGAAGAGAAAAATAGAGTTTTGCCTGGATGTTTGCTTCGAAAGATTGACACCCCAAGTACGACTGACCTTACTACGTTTGTGTCTTTACAGAGGTTTGTTTACTCCAGATAAAGCAGCAAAAATCTTTTGCTTTCCGAGTTCGAGCGAGCATGATCTCGGAGATTATATTTTGGAATTGGGACGGTGCAATCTCTTGCACCTACAAAAATTCCAAGATATAAACAAATATACATTTCTTACGGTCATTCGAGAACATTTCAAGGCAAAGCAAGAATATCGCGAAGAGCTCCAGCATGCTCGTGGTCTGCTGATCGATTACCTCATTTCTTTCTTGAAAGAGACTTTCAAGGTGTTCTTGGGCAAAAATTCAGTGAAATCGGCTATCGAGGAGTTTTTACCGGAGAAAGAGAACGTGATGCAGCTGGTTGAATGGATCAACAAGAATGAAATGGACGAGGAGCGAGTTAAGAAATGCATCGACGTCTTTAATGTGGCAGGAGAGATGCTTGCGAAGATGATGGCAAAGTTCAATTATAGAGACGTTTACGAATCTATGGCTAAGAAAAGTGAAGAAATGGGAGACCAGCGGAGACTGGCTGAATGTCTGACTTCCCTTGGGATCCAGGAAATCTTCAACTGCATATGCGCAACTGGTCTGAATGACGAGGCTATTGAGCGAGCTCGGCCTAGCTTGGAGAAAGCTCATAGGATCCAGACTCACCTTCAAGTCAGCAGGGGTAACAGCCGTGCCCAGTGCCTCGCTAAGCTTGGCCGTTGTCTAGTAAGAAGTGATGACACAGAGCGAGGGAAGGCCATGATTGAGGAGGCGATACGTATCAGAGAGGCCGCAGTCCAAACACCTGATGATCATGAAGAAGAAGGCGGCGAGAATGTCTGCGATGTCATGCTGGGTGCAACGTATAACGACAAGGCAGttgctctttcttttgaaaactgtcatcgagaggctgtgaacatcagaaaaaatcaagtgatgctgatttacacagaaagattgggtgaccatcctttcactgccaccatcctcaacaatttgtccaataatcatcgcgacctgggagaatttgaggccgctgaggagtacgctgaacaagctcgacgtattcggcgcaagttattggcggaccacagagacaccgctaaatctttgtttgatcttggagtggcactgaaagcgaacggaaagttcagagaagcaaaggatttgctagaagaatgtaaaactatgcaggagaaagtggtGAATGATAGCACCTTCGAGGAAAATTTGGAAGAAGAGCTAAGAGATGTTAACGGACTACTTAAAATGCAGCAGTCAGAGGGCCAAGATCGTTGAACCATGATTTTCGCAGGATAGCTAATTCTAAAAATACCATGAAAATAGTAGCTGTGGAAATAGTACTTATTGTATTTTAAATGTCTATAAGCTTTTACTCGGCAACTATGCGTTCTAGTCTTGGCTAACATCATAAAGGTCTGGTTAAAAAGCCACCGATTCGTGAGCATGGTACACAATAATATTAATGTATTTTATTCCTGGGAGTAAGAGCTTTCCTTCCGCTCTAAGTGTGTAAGAGCAAATTTTAAGGATTACACATTACGAATTTTATACGCTATCGTGAAATATGCACGTTCTGTGTCACAATGTAATTTGTAATATCCCTTTTAGCATAAATTGCTTTTTTGCCTACTCGTAGCAGAGGCCTGGATGAGAGTGACAAGTACTTGTAGTGCCACGTGATGGCATTTTTTTATTTAGCGAGCATAATGCTAGTGACACACTCTACGGTCCGATCTCGTCGCGTTCACCCGTAAGGCTTCTTTTATCATTTTATCGAGCTGAAAAAATCCAAGGCTGTATGCAATAGCATTCATTTGCATTGTAATTAGTGACTTTCAAAAAGAATACTTTAAAACCCGAGGGTTGCACCACTGCCTTAGTCAGGTGTACACGTTCCCTGGTTTTCCCACCTCTTAGGTTTTAGGGGTTTTTAATGTGCGGCTTTTATAATAGAGTTAATGACTAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
B2HQV2	D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) OX=216594 GN=mshA PE=3 SV=1
A0PVZ1	D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium ulcerans (strain Agy99) OX=362242 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF01335 all species →	DED	Death effector domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47691 all species →	REGULATOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0348.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.