Gene detail

Detailed information of amic_s0350.g3.t1 in Acropora microphthalma

Genomic Location: sc0000350_pilon:43766...64575
NR annotation: KXJ16402.1, hypothetical protein AC249_AIPGENE10081 [Exaiptasia diaphana]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0350.g3.t1

ATGACTGCCAAGGCTCAAAGACTACCCGAAGACGAGTGGGTTGGTAACTTAGTTCCCAAACTCATTGAGAAGGCCAAGTCCATTTATTTGGAAATTCCAGATCCCGCGGCACAAAATTACAAAGAAAGCAAATCAATTATCATTAAGGGTTACCAGTTAACAGCGGATCATTATAAATATAGGTTTAGAACTTCAGAGAAGAAACCAGATGAGGATTTTGTCCAGTGGGGTTACAGGACACGAAGATATCTAAATCGATGGATGGCAGTGGCTGAGGCTACGGGTGATGTAGAGAAGGTATTAGAACAGTTCATGATCGAACGTCTTCTTGACGCACTGAGTCCAGAACTTATGGCGTGGCTAAAGGAGCAAAAGCCTAAAACAGCAGAAGAACTAGGGAATCTCGCAAACTTGCACGTTCAGTCACGAAAAGGTCCCCTCGTGGAAGGCAGGTATGCTTCCTTTGGTAAGAATAAGGGCGATAGTTTTCAAAAACAACCACAAATCAAAAGGGAGCCTCCTATAAAGGAACAAGCTCCAGGAGAACAAACAAAGCCCGTCATTACTCCCGGTAGGAGGAATAATAAGTTGCCAGTCACATGCTATAAATGTGGGAAGCCAGGTCATATGTCTTTCAATTGTGTTAAAGGTAATTACAAGCCGGCACAAGGGTACTTACTATGTATGACTCCCTTAAAATCACACGAACTAGAATTTCCATCATGTAATGTTCAAGGAAAAATTGAGGGTAAATCAGCAGAAATGGTTGTTGATTCGGGTTGTACAAGAACCCTGGTGCATAAGAAGTTTGTCAAAAATGGTTCTTTAACTGGGGAGGAAATGTCAGTCTTGACAGCAACGGGTGAACGTCTTATTGTGCCCCTGGCCAAAGTTGAAATTGAAAGTGGACAGGGAAAACATGTTGAGTTGGTTGGGGTGCTGGATAAATTACCCGTAGATTGTCTACTTGCCATGGCGAGAATGCCAACGTTTAGACATTTGACGAATGGAGAGTTGATGCTTGGCTACACGAGAGAAGCTGATGAGGTGTTCAAGAAGAATTCCAAGAAGAATGAGCTGCACATAATGAGCAAAGCCCCCGAAGAGGTCAGAAGACTAGCTATTGAGACAGTTAAGAAGAGAAAAGGAGATGTTACGAATGAATTAGATCTGCAAGGAGAGTACTTGCTTCAGTTTGGAAAATATCGTGGCCAGTCGTTCAGGTGGATGTTAGAAAATGCCATTGGATATGTTGGTTGGTTTGTCGATAATATACGCAACGAGAGAGCGACCAACTCAGCTTTAAAGAAGTATGTGGAGTCGTTTGAAGAGGGTCGTCATGTTGTTGCCCTGAAGAAAAAGCAGAGGGAGGATAAAGAGGCCAAAATTAAATCTATTTCCAAGCAACCAAGCCAGAGCTCTCCATCAAAACAAGTTCCCTCACTTGCAGCTGGTCTGGCATCTGGACGCATAAGCAGTGAACAATATTTGTCCAAGTTTGCAAAATCTGCTGGTGCTGCAAAGTTCAAACCAACCATCCCTGTCTCAAAGAGAAAAACAAAACCAGTGACACCTTGTGCTACAGTAACTTTTACATCTACAAGTACTGACGATGCAGATGATGATGAGCTTTGTGCCATTGCAGACCAAGTAGAGAAGAATTTGGTCCAACCAACCAATGAGTCCAATAACAGTGGACAGCTTACACCTGAAGCAGCTGAGTTAGTAGAAGCACCTGAATTAGAAGTGACCAAGTCAGATGTATCCCAGCCAGTTGAGCCATCAGTATGTTATTCTTCAGGAGACCCCCTCCTCCCTGATGGTTGGCGTAAGACATTACCTAAAGCTGACCACCAGTGGATATCTCAAGCCTTATTTACTGCTAATGAAAAAGGAAAAGCAAAGCTGGACTTTAGCAGAGCCAACAAGCTTTGGTGGGACCCCCCTCAGCCACCACTTATTACCACCCAACCACCTCGCCCGGACAGGTACTTTGCTCAACGGCTGCTGCTTTGGATGCCGCGGAAGCTTTGGAAAGTCACACTGTACTGCCCACATGAAGGATGTGAAAAGCAACCACTCACTAGTGCTGGGATATATAGCACTGTCAGGCAAGTGGTAGACATTGACAGCAACTACAATCTTGCAGCAGAGTACCTTGAGTGTAGGAGTTGCACAAGAAAGGTTATTAGCTGGAGTCCTGCGATTGTAAAACAACTTGATGTTGGCCATCAAGTTCAGTTTCCAGTTTTGTTAACATATCTGTGTGCTTGTGATGTCAGAGTTATTAGACTTTTGAGGCACCGGGGACTAGGCAATAGCTCAACACAATTGCAAAAGAAGCTGACTGAAGAACACAGTGAAAAGTGGCTCCAAAAAACAGCCCAGTACCTGACTGACTGTAAATACTTTGCTAATGCATCCAAAAGTGGGCTCACTGTTCCCCTTACCTTACAAGAGCCCCCAGAACTTGTACCTGTGCCAAAGTATAGGTGGTTGCTAACAGTTTATGCCCAAGATGTCATGGCCAGGATGGACTATCTTAAAGCATCCATCACTTCTGTCTTTGGAAGAATATTGAAGATGGACTCTACCAAGAAAATTATAAGAAAACTTGCAGGAGATAGTGCTGGTACTGCTTCGTGGGCCACTAATGTAGGAAATGAATGTGGACAAGTTCTCATGTCTGTGATGACTGTCAATGAAGGAGATGGATTGGAAAATATGGTTTATGGACTTATAAGGAGATATTCTTTGGCTGGTGTTTCACCTCCTGAGGGGTGTGGTACCACTGGAGTTCCTTTGCTAGACAGACAGCGTGTATGGGAAATATGGGACAACCAAAAGCGCCATATTGCGTGCATCCAGGACCCCGAAGGAGTTCAGTTGTATACACAAACTGGGGTCTTGACTAAAGGTGGGGTCCAACTTCCAACTTATAGGTGTGCCAGAGGCTCGACATATTTGGAGTCCTTCCACCTGCATATTGATAAATTTATACCTGGTACTTCTGCAAGTGACGTGCATTTTCAAGCTTACTTGTTAGATGGCCTCATGAGGTGGAATGCTGACCGTGCTCTTGCTGCAGTATCAAGTACTGGGTCAGGACAGGAAAGCTACAGTGGATTATTAATAACAGCTGTAAATCAACTAAGCACAGATGTTCTTGGTAAGCCAATTAAGTCCCATGTTCAGAATGTTGGAGTCCACACAGGTGAACTAATAGGAGTTGAGTACCTCTATAATCAAACTGGTGAGATACTCAAAGACAACACCCTTGAAGATGAAGGTGTCAGGCCACCCAGAGAAGAGCCCCTTTCAGATATAAATCCAGACCAAATAGACGAAGGATTCAATGAAGATGAAGACGACACTATTGCACAAGCAGAGCAGGTGTTCACTATTCCATTGGGTAGTGATAAAGCCTCGGAAGCTAACAGTTCTTCAGATGCAGATACAGAGGAGGATGCAGGGAATGAATTATCATGTGATGTGGAAGAATCAACTCGGCCTGATAACATTCAAGGATATAGAGAAGTTCAGGCCTTAGCAGCATATTTGGTTTCTTTGAGAGATGGAAATATGGCCTTGTCAAATACCCAGGCCAATGAAATAATCAGGTTATGGAAAAGCCTTCAGGAATATGATCAACAGCCAACAAAATTTCCTCTGCGACACCGCACCACACTGGTAAAGGGAAAGTTTAAAGCGCCAAAGAGAAGAAGCACTAACGTTGTTGTTCCAGGCCTTGACAGCACTAAGAGATGTTTTTTAGGTTCCAACAGTGGTCCAGCCCAGTGGCCAGATTGTAACAGGTACACTGAGGCAATTATAGCGCAACTGTGCAATCTACATCCAGGGCCAGAAAGATCATGCAAAAAAACTACTAGCCGTTGGACTCTTGTGTGTAAAGACTACAGAGGCGTACAAGAACGAGTTATGAATAGTGGCATGGTGATGAGGGAAACACAGATACAGCTACCAGACATTAATCAAACAACACTAAGTCAGTGGTATAACAAGCGGCAAAAGAAGAAAGAGCAAGAAATACTTAAACAGGGATTACCTCAACCAACCCAAGCAGCAGAAATATCAAGTACACCATTACCAGAAGCCATAAAACTGCCTCCATCTCTACCACAAGTCAAATTTCCAGTGCCATTTAATTTTGTATTACCATTGAATACCACAGGAACTGCTACTCTCAGAGATCTAAATTCCAAACCGTGCATGCCAATACCAATTCTTCCAGCTCCTGTTCCTTTTGAAAGAACAATTCAACCTGTACCGATAcatccagcatcagcatccaccatccagcatcagcaGTCTCACCAAATCATGCCGCAATCTCAATTGCAACAAAACCCAACGCAAAGAGATGAAACAAGGACCAAACAGGAAGACAAAGGATGTGATTCTACAGGAGTTCCTTTACTCAACATTGATCGCATTTGGGACATCCAGCAGATGTGCAGCTCTACACAAACACTGGTGTCACGCTGCCCACTTACAGGTATTTCTGCAAGTGCAATGCACTTCCAATTCTACACGCTAGAAGGTTTGTTGAGGTGGAATGCCAATCGAGCTTCTGATGCAGTTTCCAGTTCTACTAAAGGGCCTGAAACATATAGTGGAGCCCTATATCACTCCTTGAATGAATTAGGTGATGATGTACTTGGAAAAAATATCAACCCTGATGTTGCGAACGTTGGCATTTACACAAGTGAGTGTATTGGTGTAGAATACGTTTTCAAAGTGTCAAAGTTCCTAAGAGAAGAACTACCTGTGTGA

Transcript

amic_s0350.g3.t1

GGGTGAGGACATTGATGATTATTTTCGAATTTTTGAAATGACTGCCAAGGCTCAAAGACTACCCGAAGACGAGTGGGTTGGTAACTTAGTTCCCAAACTCATTGAGAAGGCCAAGTCCATTTATTTGGAAATTCCAGATCCCGCGGCACAAAATTACAAAGAAAGCAAATCAATTATCATTAAGGGTTACCAGTTAACAGCGGATCATTATAAATATAGGTTTAGAACTTCAGAGAAGAAACCAGATGAGGATTTTGTCCAGTGGGGTTACAGGACACGAAGATATCTAAATCGATGGATGGCAGTGGCTGAGGCTACGGGTGATGTAGAGAAGGTATTAGAACAGTTCATGATCGAACGTCTTCTTGACGCACTGAGTCCAGAACTTATGGCGTGGCTAAAGGAGCAAAAGCCTAAAACAGCAGAAGAACTAGGGAATCTCGCAAACTTGCACGTTCAGTCACGAAAAGGTCCCCTCGTGGAAGGCAGGTATGCTTCCTTTGGTAAGAATAAGGGCGATAGTTTTCAAAAACAACCACAAATCAAAAGGGAGCCTCCTATAAAGGAACAAGCTCCAGGAGAACAAACAAAGCCCGTCATTACTCCCGGTAGGAGGAATAATAAGTTGCCAGTCACATGCTATAAATGTGGGAAGCCAGGTCATATGTCTTTCAATTGTGTTAAAGGTAATTACAAGCCGGCACAAGGGTACTTACTATGTATGACTCCCTTAAAATCACACGAACTAGAATTTCCATCATGTAATGTTCAAGGAAAAATTGAGGGTAAATCAGCAGAAATGGTTGTTGATTCGGGTTGTACAAGAACCCTGGTGCATAAGAAGTTTGTCAAAAATGGTTCTTTAACTGGGGAGGAAATGTCAGTCTTGACAGCAACGGGTGAACGTCTTATTGTGCCCCTGGCCAAAGTTGAAATTGAAAGTGGACAGGGAAAACATGTTGAGTTGGTTGGGGTGCTGGATAAATTACCCGTAGATTGTCTACTTGCCATGGCGAGAATGCCAACGTTTAGACATTTGACGAATGGAGAGTTGATGCTTGGCTACACGAGAGAAGCTGATGAGGTGTTCAAGAAGAATTCCAAGAAGAATGAGCTGCACATAATGAGCAAAGCCCCCGAAGAGGTCAGAAGACTAGCTATTGAGACAGTTAAGAAGAGAAAAGGAGATGTTACGAATGAATTAGATCTGCAAGGAGAGTACTTGCTTCAGTTTGGAAAATATCGTGGCCAGTCGTTCAGGTGGATGTTAGAAAATGCCATTGGATATGTTGGTTGGTTTGTCGATAATATACGCAACGAGAGAGCGACCAACTCAGCTTTAAAGAAGTATGTGGAGTCGTTTGAAGAGGGTCGTCATGTTGTTGCCCTGAAGAAAAAGCAGAGGGAGGATAAAGAGGCCAAAATTAAATCTATTTCCAAGCAACCAAGCCAGAGCTCTCCATCAAAACAAGTTCCCTCACTTGCAGCTGGTCTGGCATCTGGACGCATAAGCAGTGAACAATATTTGTCCAAGTTTGCAAAATCTGCTGGTGCTGCAAAGTTCAAACCAACCATCCCTGTCTCAAAGAGAAAAACAAAACCAGTGACACCTTGTGCTACAGTAACTTTTACATCTACAAGTACTGACGATGCAGATGATGATGAGCTTTGTGCCATTGCAGACCAAGTAGAGAAGAATTTGGTCCAACCAACCAATGAGTCCAATAACAGTGGACAGCTTACACCTGAAGCAGCTGAGTTAGTAGAAGCACCTGAATTAGAAGTGACCAAGTCAGATGTATCCCAGCCAGTTGAGCCATCAGTATGTTATTCTTCAGGAGACCCCCTCCTCCCTGATGGTTGGCGTAAGACATTACCTAAAGCTGACCACCAGTGGATATCTCAAGCCTTATTTACTGCTAATGAAAAAGGAAAAGCAAAGCTGGACTTTAGCAGAGCCAACAAGCTTTGGTGGGACCCCCCTCAGCCACCACTTATTACCACCCAACCACCTCGCCCGGACAGGTACTTTGCTCAACGGCTGCTGCTTTGGATGCCGCGGAAGCTTTGGAAAGTCACACTGTACTGCCCACATGAAGGATGTGAAAAGCAACCACTCACTAGTGCTGGGATATATAGCACTGTCAGGCAAGTGGTAGACATTGACAGCAACTACAATCTTGCAGCAGAGTACCTTGAGTGTAGGAGTTGCACAAGAAAGGTTATTAGCTGGAGTCCTGCGATTGTAAAACAACTTGATGTTGGCCATCAAGTTCAGTTTCCAGTTTTGTTAACATATCTGTGTGCTTGTGATGTCAGAGTTATTAGACTTTTGAGGCACCGGGGACTAGGCAATAGCTCAACACAATTGCAAAAGAAGCTGACTGAAGAACACAGTGAAAAGTGGCTCCAAAAAACAGCCCAGTACCTGACTGACTGTAAATACTTTGCTAATGCATCCAAAAGTGGGCTCACTGTTCCCCTTACCTTACAAGAGCCCCCAGAACTTGTACCTGTGCCAAAGTATAGGTGGTTGCTAACAGTTTATGCCCAAGATGTCATGGCCAGGATGGACTATCTTAAAGCATCCATCACTTCTGTCTTTGGAAGAATATTGAAGATGGACTCTACCAAGAAAATTATAAGAAAACTTGCAGGAGATAGTGCTGGTACTGCTTCGTGGGCCACTAATGTAGGAAATGAATGTGGACAAGTTCTCATGTCTGTGATGACTGTCAATGAAGGAGATGGATTGGAAAATATGGTTTATGGACTTATAAGGAGATATTCTTTGGCTGGTGTTTCACCTCCTGAGGGGTGTGGTACCACTGGAGTTCCTTTGCTAGACAGACAGCGTGTATGGGAAATATGGGACAACCAAAAGCGCCATATTGCGTGCATCCAGGACCCCGAAGGAGTTCAGTTGTATACACAAACTGGGGTCTTGACTAAAGGTGGGGTCCAACTTCCAACTTATAGGTGTGCCAGAGGCTCGACATATTTGGAGTCCTTCCACCTGCATATTGATAAATTTATACCTGGTACTTCTGCAAGTGACGTGCATTTTCAAGCTTACTTGTTAGATGGCCTCATGAGGTGGAATGCTGACCGTGCTCTTGCTGCAGTATCAAGTACTGGGTCAGGACAGGAAAGCTACAGTGGATTATTAATAACAGCTGTAAATCAACTAAGCACAGATGTTCTTGGTAAGCCAATTAAGTCCCATGTTCAGAATGTTGGAGTCCACACAGGTGAACTAATAGGAGTTGAGTACCTCTATAATCAAACTGGTGAGATACTCAAAGACAACACCCTTGAAGATGAAGGTGTCAGGCCACCCAGAGAAGAGCCCCTTTCAGATATAAATCCAGACCAAATAGACGAAGGATTCAATGAAGATGAAGACGACACTATTGCACAAGCAGAGCAGGTGTTCACTATTCCATTGGGTAGTGATAAAGCCTCGGAAGCTAACAGTTCTTCAGATGCAGATACAGAGGAGGATGCAGGGAATGAATTATCATGTGATGTGGAAGAATCAACTCGGCCTGATAACATTCAAGGATATAGAGAAGTTCAGGCCTTAGCAGCATATTTGGTTTCTTTGAGAGATGGAAATATGGCCTTGTCAAATACCCAGGCCAATGAAATAATCAGGTTATGGAAAAGCCTTCAGGAATATGATCAACAGCCAACAAAATTTCCTCTGCGACACCGCACCACACTGGTAAAGGGAAAGTTTAAAGCGCCAAAGAGAAGAAGCACTAACGTTGTTGTTCCAGGCCTTGACAGCACTAAGAGATGTTTTTTAGGTTCCAACAGTGGTCCAGCCCAGTGGCCAGATTGTAACAGGTACACTGAGGCAATTATAGCGCAACTGTGCAATCTACATCCAGGGCCAGAAAGATCATGCAAAAAAACTACTAGCCGTTGGACTCTTGTGTGTAAAGACTACAGAGGCGTACAAGAACGAGTTATGAATAGTGGCATGGTGATGAGGGAAACACAGATACAGCTACCAGACATTAATCAAACAACACTAAGTCAGTGGTATAACAAGCGGCAAAAGAAGAAAGAGCAAGAAATACTTAAACAGGGATTACCTCAACCAACCCAAGCAGCAGAAATATCAAGTACACCATTACCAGAAGCCATAAAACTGCCTCCATCTCTACCACAAGTCAAATTTCCAGTGCCATTTAATTTTGTATTACCATTGAATACCACAGGAACTGCTACTCTCAGAGATCTAAATTCCAAACCGTGCATGCCAATACCAATTCTTCCAGCTCCTGTTCCTTTTGAAAGAACAATTCAACCTGTACCGATAcatccagcatcagcatccaccatccagcatcagcaGTCTCACCAAATCATGCCGCAATCTCAATTGCAACAAAACCCAACGCAAAGAGATGAAACAAGGACCAAACAGGAAGACAAAGGATGTGATTCTACAGGAGTTCCTTTACTCAACATTGATCGCATTTGGGACATCCAGCAGATGTGCAGCTCTACACAAACACTGGTGTCACGCTGCCCACTTACAGGTATTTCTGCAAGTGCAATGCACTTCCAATTCTACACGCTAGAAGGTTTGTTGAGGTGGAATGCCAATCGAGCTTCTGATGCAGTTTCCAGTTCTACTAAAGGGCCTGAAACATATAGTGGAGCCCTATATCACTCCTTGAATGAATTAGGTGATGATGTACTTGGAAAAAATATCAACCCTGATGTTGCGAACGTTGGCATTTACACAAGTGAGTGTATTGGTGTAGAATACGTTTTCAAAGTGTCAAAGTTCCTAAGAGAAGAACTACCTGTGTGATCCCAGGATTAGAAAGTACTATGAGATGTTTCTTAGGTAGCAATGCTGGTCCTGTGCAATGACCTGATTGCAATAGATATGTAGAGGCAGT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000658 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02023 all species →	SCAN	SCAN domain	Domain	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF20499 all species →	DUF6729	Domain of unknown function (DUF6729)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038269 all species →	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR003309 all species →	Domain	SCAN domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR046616 all species →	Domain	Domain of unknown function DUF6729	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24401 all species →	SI:CH211-243P7.3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0350.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.