Gene detail

Detailed information of amic_s0352.g1.t3 in Acropora microphthalma

Genomic Location: sc0000352_pilon:1...17755
NR annotation: XP_044184229.1, uncharacterized protein LOC122964593 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0352.g1.t3

ATGGAAAGTTTGTGTGTTCCTTTTTTTACTCTTCGTTGTAGTGCCATTTTGGGAAACTCCATTGACATTCACACTGGCGGAGTGGACTTGAAATTTCCTCATCACGACAATAAATTGGCACAGTCCGAGGCCCATTATGGTGTGTCTCAGTGGATTCATTATTTTTTGCATGGTGGTCATCTCACCATTGAAGGATGCAAAATGTTGAAGTCTTTGAAGAATTTCATCACAATCAAGGAAACAGATAAAGCAAACGAGGGGCAGAAAAGATCACTTACCAAGAGGCGAAAGGAAGCTCTGTATTTTTATCTTCGTTTCACCTTGTTGGAAGGAGATTTTCCAAGGAAGCGGAAGAAATGTCTGGACGATCTCTACCGAAATGGATTGCTCCTGAAGGATGTGGGGAACTCAAGCTGTATAACAGTCTTACACGTGAAAAGGGAATTCTTCTATCCAAAAGGAGGTATGCCAAGAACAAAGGTGGACCACTTTGTTTCGTTTCTTAATTTCGACAACGAATGCGACTTTTTCAAGCGTTTTAGTGTGCAGATGACCGCCATTCAACTGGATACTCTTCTGACGGAACTGGAAACTGCTGTGGAAATTCCTGACCTCGTTCCAAGGGCTGTGTCGATTGTTGGTAAGAACATCAACACAGCAAATGAAGAAATCTGGGCCCTTAAACGTGATCTATTTATTGATGCCAGAGGCCGCTTAGTAGAGCCACGCGACCATTGTATATCCTGGATAGGGCATCTGCTCAAGGACCCAGGGAACAAAATCGCGAATGAAGATAGAAGTGCAGATGTGCATCTACCCTTGACAGCAAAGTATTTTGACCTTGTTTGCCATTTCTTGTGGGGAGATTTGTTCAATGCTGCTGAAAAGGACGACTCCCTATCGCGAAGTCTAGATGAAGTTTTAAGAGACGCCGGAATAAACCGAGAAAGTTTATCAGCTCATGATGACACTAGGGAAAATGGAAACTTCTTGTCCTCATTTTATACGGCTGCGATGAGCTTGATTATTATTCATTATGACAAGTGGCAGATGTTAGCTGGATCATGCCCATTGCCTGCTGCCTTAGGAGAGCCAGACAGTGGAAAGTCCACGGCGTGTAAACTGGCCTTAGCAGCCACCGGAGGCTGGAGGAAGAATTTCTTCGCCTCTGTGACTGAGAAGGTTATTGGAAAAGTCGCAAGTCAGACAACTATGGGATTTGTAGTAGATGACCCTACTAGGCCCCAAGATGTAGGCGAAGCGGCAAAGAAATTTTTTAATGATGGCAGTAATATCAACTGCCGGACAGACTGGAGCCCCAAGTGCTGCCCCCTCTTTTCCATGAATAACCATGTTCTGGACTGGTTATCCAAGCCAGAAAGAGAGAGGTTGCTGTCCCGAATAATTTTCATTCCATTTTCAAGTGTCCAGCGAGTGATCACAGAGGAGCAATCAGCCCTATGGCAGCAAATTTTTGATAAAATACTATCAAAAGTCTCCGCTTTTGTTGGAAAATGGCTAACGTCGAACGAGGGATGTCAGCAGTTTAACGACTGTCTGGGGATTGTGGTGCAAGGCTTGGGAGAAGAAGGAAAGGGCACGCATTTCGCAAAAATGTGGGCCTGTGCTCTCATGGCATGTTTAAAGATCATTTTCAGAGCAAGACGAAACCATCTCCTTGAGAAATATATTGAGGAGAATAACTCCCCAGAGAAGATTTTAGAAGATGTAAATTCTGCTCTCAAGTCCTACTCAGTAAAAATGGAGAATACCACAGATGAAGACAAGACAAATATGTTCTGTAGAATTATTGAAAAAGTGAAATCCTTATTCCAGATCCTTCCTGTAGACTGTTTAACAAGGATTATGCAATACATTCCTGAATGTGCAACATTTATCCAGAAAATTATTGAAAATGGATATGCGTATGAAGCTAATGGTTCAGTGTATTTTGACACTATCAAGTTTGGATCCAGTGGTAAACATGCCTATGCCAGATTGGTTCCTGAAGCGGTCGGTGACATGGAGGCTTTGGCAGAAGGAGAAGGTAGA

Transcript

amic_s0352.g1.t3

CAGATCATTTTCAGAGCAAGATGAAACCATCTCCTTGAGAAATATATTGAGGAGAATAATTCCCCAGAGAAGATTTTAGAAGATGGAAATTCTGCTCTCAAGTAAGTGAACGTTTGATTTTCCTTCATCTTTATCTCTCTTTTAAACGAATTTCAAATGGAAAGTTTGTGTGTTCCTTTTTTTACTCTTCGTTGTAGTGCCATTTTGGGAAACTCCATTGACATTCACACTGGCGGAGTGGACTTGAAATTTCCTCATCACGACAATAAATTGGCACAGTCCGAGGCCCATTATGGTGTGTCTCAGTGGATTCATTATTTTTTGCATGGTGGTCATCTCACCATTGAAGGATGCAAAATGTTGAAGTCTTTGAAGAATTTCATCACAATCAAGGAAACAGATAAAGCAAACGAGGGGCAGAAAAGATCACTTACCAAGAGGCGAAAGGAAGCTCTGTATTTTTATCTTCGTTTCACCTTGTTGGAAGGAGATTTTCCAAGGAAGCGGAAGAAATGTCTGGACGATCTCTACCGAAATGGATTGCTCCTGAAGGATGTGGGGAACTCAAGCTGTATAACAGTCTTACACGTGAAAAGGGAATTCTTCTATCCAAAAGGAGGTATGCCAAGAACAAAGGTGGACCACTTTGTTTCGTTTCTTAATTTCGACAACGAATGCGACTTTTTCAAGCGTTTTAGTGTGCAGATGACCGCCATTCAACTGGATACTCTTCTGACGGAACTGGAAACTGCTGTGGAAATTCCTGACCTCGTTCCAAGGGCTGTGTCGATTGTTGGTAAGAACATCAACACAGCAAATGAAGAAATCTGGGCCCTTAAACGTGATCTATTTATTGATGCCAGAGGCCGCTTAGTAGAGCCACGCGACCATTGTATATCCTGGATAGGGCATCTGCTCAAGGACCCAGGGAACAAAATCGCGAATGAAGATAGAAGTGCAGATGTGCATCTACCCTTGACAGCAAAGTATTTTGACCTTGTTTGCCATTTCTTGTGGGGAGATTTGTTCAATGCTGCTGAAAAGGACGACTCCCTATCGCGAAGTCTAGATGAAGTTTTAAGAGACGCCGGAATAAACCGAGAAAGTTTATCAGCTCATGATGACACTAGGGAAAATGGAAACTTCTTGTCCTCATTTTATACGGCTGCGATGAGCTTGATTATTATTCATTATGACAAGTGGCAGATGTTAGCTGGATCATGCCCATTGCCTGCTGCCTTAGGAGAGCCAGACAGTGGAAAGTCCACGGCGTGTAAACTGGCCTTAGCAGCCACCGGAGGCTGGAGGAAGAATTTCTTCGCCTCTGTGACTGAGAAGGTTATTGGAAAAGTCGCAAGTCAGACAACTATGGGATTTGTAGTAGATGACCCTACTAGGCCCCAAGATGTAGGCGAAGCGGCAAAGAAATTTTTTAATGATGGCAGTAATATCAACTGCCGGACAGACTGGAGCCCCAAGTGCTGCCCCCTCTTTTCCATGAATAACCATGTTCTGGACTGGTTATCCAAGCCAGAAAGAGAGAGGTTGCTGTCCCGAATAATTTTCATTCCATTTTCAAGTGTCCAGCGAGTGATCACAGAGGAGCAATCAGCCCTATGGCAGCAAATTTTTGATAAAATACTATCAAAAGTCTCCGCTTTTGTTGGAAAATGGCTAACGTCGAACGAGGGATGTCAGCAGTTTAACGACTGTCTGGGGATTGTGGTGCAAGGCTTGGGAGAAGAAGGAAAGGGCACGCATTTCGCAAAAATGTGGGCCTGTGCTCTCATGGCATGTTTAAAGATCATTTTCAGAGCAAGACGAAACCATCTCCTTGAGAAATATATTGAGGAGAATAACTCCCCAGAGAAGATTTTAGAAGATGTAAATTCTGCTCTCAAGTCCTACTCAGTAAAAATGGAGAATACCACAGATGAAGACAAGACAAATATGTTCTGTAGAATTATTGAAAAAGTGAAATCCTTATTCCAGATCCTTCCTGTAGACTGTTTAACAAGGATTATGCAATACATTCCTGAATGTGCAACATTTATCCAGAAAATTATTGAAAATGGATATGCGTATGAAGCTAATGGTTCAGTGTATTTTGACACTATCAAGTTTGGATCCAGTGGTAAACATGCCTATGCCAGATTGGTTCCTGAAGCGGTCGGTGACATGGAGGCTTTGGCAGAAGGAGAAGGTAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49589	Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=CARS1 PE=1 SV=3
Q4R550	Cysteine--tRNA ligase, cytoplasmic OS=Macaca fascicularis OX=9541 GN=CARS1 PE=2 SV=1
Q291L4	Cysteine--tRNA ligase, cytoplasmic OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Aats-cys PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001989 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01406 all species →	tRNA-synt_1e	tRNA synthetases class I (C) catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024909 all species →	Family	Cysteinyl-tRNA synthetase/mycothiol ligase	Interproscan
IPR032678 all species →	Domain	tRNA synthetases class I, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10890 all species →	CYSTEINYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004817 all species →	Molecular Function	cysteine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006423 all species →	Biological Process	cysteinyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0352.g1.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.