Detailed information of amic_s0352.g12.t1 in Acropora microphthalma

Genomic Location: sc0000352_pilon:105227...110735
NR annotation: XP_015769630.1, PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 6-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZL34Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1
Q0P5D2Cleavage and polyadenylation specificity factor subunit 6 OS=Bos taurus OX=9913 GN=CPSF6 PE=2 SV=1
Q16630Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens OX=9606 GN=CPSF6 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002735 (this species only)

 Pfam domain
No Pfam domain signature was detected for amic_s0352.g12.t1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034772
all species →		FamilyCPSF6/7 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23204
all species →		CLEAVAGE AND POLYADENYLATION SPECIFIC FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005847
all species →		Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0098789
all species →		Biological Processobsolete pre-mRNA cleavage required for polyadenylationInterproscan
GO:0110104
all species →		Biological ProcessmRNA alternative polyadenylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0352.g12.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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