Gene detail

Detailed information of amic_s0353.g3.t1 in Acropora microphthalma

Genomic Location: sc0000353_pilon:58140...67005
NR annotation: XP_015778791.1, PREDICTED: ephrin type-B receptor 2-like isoform X5 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0353.g3.t1

ATTTTATTTCTCTAAACATTGCAAGTGTTCCAGACCCCGTCATCGCAATGTGAAGCTTTTAGAAAACTGTATGTACATTATTTGCGTTCACTGTGTTGATGTGCTTTGCTTCTATGTGTTTGCTTTTTCTCTCATTTCTTACCTCTCTTCACAGTGGTATCAACCAACTGGACAGAACAACAGATATGGTATTTGCAATCTGGATAACCCCCAAGAGCCAAATAACTGGTTACGAAGTCCTGTCATTAAAGTTGGAGACATTCAAAGATTAGATGTCACCGTTAGATACTCTTCGCAGCAGTGCCGTCAATCAGCTTCATTTTGTAAAGAATTTTTTTACGCGTATGTCTGGGAATCAAATACAAGAGTCACTACGGAAGAAATTCCTGATCCTATCAGCGACTTTCAGTTATATCGACGATTCGCTAATATCACTCGACAGTCTGACGAGGAGACAATTTTAACAGTACCCCTTCATTTGACCAGCAAATATATTGTGCTGGGAATTCGGGATCAAGGCGGGTGCAGAATATTGTTTTCCGTGAAAGTTTCTTATATGGTTTGTTCTGAAAAGACACTTGAAGACAGCCTGGTGTCCCTTCCTTCAACTGTTTCCCTGGTAGAGCCAACACCTGTACAAGGAATTTGCATGGCGAACTCTAGGCAAATTGTGCCTGGAAATTTGACTGTTTTTTGTGATAGCGATGGAGAGTGGAATACCAGTCGACTTGAAAACAGATGTCTCTGTAAGGAAGGCAAGGGAAATGTAAAAGGAGTTTGCATAGAGTGTCCTAGTGGAACATACAACGAAGGGAGAGGTCTTAACTGCACAGAGACACCATCAAAGCCGAGAAGTGCGTCCGTATATTTCGTCAATGAAAGCTCAGCTATCTTAACTTGGTTTGTTCCTGAGATCACTGGAACTCCACCCAACGTGTCGTATGATGTGAATTGTCGCCCGTCCTGTGAATATCTTAGCGGCTGCGAAAACAAAACCTGCAACAGCGACATCAACGGTCAATTGACAGGGGAAGGGCTCAAAACTACTATCTTCACCGCAGCAAATCTGGCTTCCTTTGTAAACTACACATGCAAAATAACTGCCAAGAATAGAGTCAGCAAGATTGCTGCTGCAAAAACACAGGCCTCTGAAAGTGAAGGAACCATTACTTACGTAAATCTGAGGACTAAAGGATCTGTTCCTGGTGCACCTGAATATGATACTGTCGCTTATCACACCGAAACTAATTTTATCACCCTATCATGGATTGTGAAATGTAAAAATGGCATCATTCAAGAGTACAGGATAGAATACTTCAGCGTGGACGATTCCTCTGGGAGTAAAACTCTTAGTACCAGACACAACAAAATACAGATAGGCAGTCTGCCTGTGGGAAAAACCTTAAAATTTCAGgtgtatgctgtgaataactttgggacaggatcacccggtgtcacaacgttccaaattccaaaagGAAACCCTGGAAAGCTTCCGTTAGCATTTATCGCTGCAGCTTCAGGGGGTGGAGCCTTCCTAGTTATTATCGTTGCTGTTATTTGTTTCGCATGCGTTGTTCGTGGCAGAAGGCGCAGGGCTCAAAGTATGCAAAAAGACTACATGCGATGTCTGGAGCGAGGATCAGACAATAATTTACCAATGGATCAACGTCGGTACATCAATCCCGGAGACTACCGTGACCTTATGGAGCTACTGCAAACATTCACTACTGAAGTCGATAGAAGCAAAACCAAGTTGAACGGGTTGATTGGGCAAGGCGAGTTTGCAGATGTTTACAAAGGATCCATTCAGACTCCGAAGGGAAAGCTAGCTGTGGCGGTCAAGGTTTTGAGGCCTGGTTCCAATGAAAAAAACCAAAAGGATTTTTTGTCCGAAGCATCTATCATGGGTCAGTTTGATCATCCAAATGTCATTCGACTTGTAGGAGTGGTCACTCAAAGTAAGTAAAAGTACTTGAAATATGGCGTTCCTCACATTTTAGTGCTCTGTTTGAACAAGGGATTTATTTGGGTACCGGGCATCTTGACATCATTGATTCAAAAGAGTGCAACGTTACCTAAGAATTATTGGACATTATGGTTATAAAAATGTGTTTTCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07497	Ephrin type-B receptor 5 OS=Gallus gallus OX=9031 GN=EPHB5 PE=2 SV=1
Q07496	Ephrin type-A receptor 4 OS=Gallus gallus OX=9031 GN=EPHA4 PE=1 SV=2
Q8CBF3	Ephrin type-B receptor 1 OS=Mus musculus OX=10090 GN=Ephb1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0353.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.