Gene detail

Detailed information of amic_s0354.g8.t1 in Acropora microphthalma

Genomic Location: sc0000354_pilon:223724...226125
NR annotation: XP_015774596.1, PREDICTED: protein NLRC3-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0354.g8.t1

CTATGCATTTTCTCACAAGACGTTTCAAGAGTATTTCGCTGCGTTGTATTTGGCGAATGAGGTGTTAACGTGCAGCAAAGAAAGCGAGGCGCTGCTGTTGAAAGTGAGTCCTGTGGACAATTGGCAGGTGTGGAAGTTTCTACTTTCATTGGTAGCAAAGGTGGGCTGCGGCGAAAAGGCTGTGTTTCTTGTTTCATGTCTGGGTGTGCCATAACGTCACGCAATACCTGCGAATGACATCACGAAAACCATGTGGTTTAAAAGTCCCCAAGACCATTTTTCGAATATTTATGAATGGTGCTGGCCTAGCACTTTGTATAGACCATACGGATGTATTGTGGCTAATGTTGTTGATGTTATTGGTGAGTGGGAAGATTCTCACGTGGTAGAGCTAAATGATTGCGAAAAGAAAATGGCAGCCAAACTTGCGGAATGCATTTCCTTGGATGAGTTGGATTTGTTTACACCAATTACCCGCCAACTTCTCTTTTTCATAGAATATTTGAGAGGTAGCTGTACATTGAGAAAACTAACTTTGACTCTGTGGGATAAAAACTTGTCCCAAAGTGTTGACATCAGGGCGTTAGCATGGGCTCTTCAATTCAACGGCGTGCCGCTTACGCATCTAAATTTGAACTTTTTTCTCCATGGTGATGAAATTGCTGTGGCTTTGAGCGAAGTCTTGGAGTCTAATACTACTCTAACCCACTTGTGTTTAACATTCAGTGAGGATAAACCTGCAGACCCAATCGGCCCGTCAGGTGCGTCAGCATTGGCAAGAGCACTAAGCAAAAACAGTACATTGAAATGTTTACTTCTGGGACAAAATTCTGTCGAGGACGAAGGAGCTAAAAGATTTGCAGATGCTCTCCAGACAAATTCTACTCTGACTCAGTTGGATCTCCGTGAGAATAGTATCGGTGCTTCAGGAACAAAAGCGATTTGCAAAGCACTGCAGTCCAATCACGTAATGACCCTTTTAATTCTACGTGGTAACACCATTGGTGATTCGGGAGCAGATGCTTTGGCGGGAGCATTACAATCGCGAGCAACACAGTTGTCCCATTTAGATCTTGCGCATTGCAAGATCACTTCTCCGGGTGTAGAAAGCCTTGCAGGGGCTCTTCAGACCAATCGATCTCTGACGCATTTGCGCCTGGAAGCTTCAAATATTTCATGTTCAGCCACTGCGCTGGCTGAGGCGCTACGATTGAACCGAACTCTGACTCATTTGGATCTCTGTGCGAGTAATATCGGTGCTTTAGGAAGGGAAGTGATTTCTATGGCACTGCAGTCCAATCACGCGGTGACCTGTTTAATTCTAGGTGAGAACACAATTGGTGATTCAGGAGCAGTAGCTTTGGCAGAAGCATTACAATCGCCAGCCACACAGTTGTCCTATTTACATATTGCTGGGTGCAATATTACTTCTCTTGGTGTAGAAATCCTTGCAGGAGCTCTTCAGACCAATCGGTCTCTGACGCATTTGAGCCTTTCACGTTCAAGTATTTCATGTTCAGCCATTGCGCTGGCTACGGCGCTACAACTGAACCGAACTCTGGCTCATTTGGATCTAAGCTTTAACCAGATTAGCGATACTGAAGCTATACAACTGGCGCAAACTCTTCTGGACAAGAAGAACACCTTGGCTCATTTAGATTTGATTTGCAATGATTATATCGGTGCCGAAGGAATAGCAAAACTTAAATTGATTAATGGGAAGAGATGTGTCATTCGTTTTTAGCATACGAACTTTATCCGTGAGTACTTCAGTGGTCAGTAGTCGGTCCTGTGCTCAATGCGTTTTGACTCTGAGAGTGGTGCTTCTATAAATGGTACAATTATCCTGCTCTAAAAGACTTGTGAATTTGTCAATAACATTTTTGTCGTCGTTTTCTTTGTTGAATATGAATGATTCTTTCAGTGCAATATTAATTTTTTCCACTTCCTGCTAAATGTGCTATTCTTGCGATTTTTTTTTACCCTTAATTAGTTAAATGTTCATTCTTAGTTAAATGTTCGCAAGAAAATTCAGCTTATAGAGGTCCTACTTTCGTCTTTGGTACTTTTCTCTGGTTTGTTTTGTTAAATGAATTAATGCTGTGTGCGATTCTGGCTGGTGCGCGTTTTAGCATTGCCGATAAAATCCTTGCGATTTTTGTGATTATTCTTGGTAGTATTTTGTTTATAACGTTTTCAATCCATTGAAACCCTGAGGTTATTAGAATACAGTTGACTGTCTGAATGGTATGGTAAGGTAGGTAGGTAGTACTTTAAAAAATTCAGGCGTGGATtttttaggcctttctcttgttcctgcttagctatcggtcataactttcgtcgatcatctacactgaaattgtttcaatccgcagtttaaatacatgaaGGAGATAGGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR052201	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan