Gene detail

Detailed information of amic_s0365.g2.t2 in Acropora microphthalma

Genomic Location: sc0000365_pilon:27056...47704
NR annotation: XP_044171643.1, D-inositol 3-phosphate glycosyltransferase 1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0365.g2.t2

GTCTTTCCTTTTTTGTTCTAATTTGCTGCTAAACCAAAACATGCTTAAGTGTTCTACTTGATTTTTAAATTAGGTGCCACTTTTAGTGAAATTAAAAGTGCTAAGATAACTGTGGAAATGGTTTCCTTTAGCTTCCTGTGATGGCGACACATggttcatcctttccaggcacatcaggttctttgtcacaggaagccacagaaggcggcgcaagtttgatttccagcaggaaactaaatgttactttgctaggtagtgagtgggggtctacaaaaggaggcttgtccacatttaacagagaacttgctattcatttggcaaagcatgacaatgtggaagttagcatgtaccttcctcagtgcagtgaggaagataaaggagcagctgctaaattcagagtcaatcttcttaaagcagagaagaagcctgcaagtgatccaattgaatggttagcatcggttccaagagagcattgtatggacgttgtgataggtcatggtattcatcttggtcgacaggttccaaggataaaagagctacgtcccaattgcaaatggattcaatttgttcacacagacgctgaagaacttggaatgtctaaggactatccttgtcccactgtcaaaggtgaaaaaaagcacgaggctgaggttgaactctgcgaatgggcagatcaagttgcagctgttggacccaaattgtccgaaacctttgctcgctatttgcgtcccactggaaaggatcaagatgtcataaatttcaccccaggcctcttttcagagttttctaatataaaacaagctgctgaagaaggagaaatattttgtgttttagtctttgggcgtggtgataaagaagattttcatgtaaagggatacgacattgctgcacgtgcagttgctaagctgaaagacgaagaacgctctttcaaacttatgtttgttggtgcaccaaatggagaagaggagaaagtaaaggaaagattccttgatgaaggcatttcacccaatcaactcattgtgcgcagtgcaaaggacagagaacagcttgccaagcagttttgtcaagctgaccttgttataatgccctcaagaactgaaggttttggtctggctgcactggaagctttgtctgctggtcttcctgtgcttgtcagtggtaattccggtattggcaaggctttgaaaaaggttcccagtggtccaaactgtgtggtcaggagtgacgatccagtgaagtgggcagaggcaatcaaggcagtttgcagaaaggaaagaaaagtacgactgaaggaggctattttgcttcgtcaaaactatgcagagacgtaccagtgggaagggcaatgcagcacacttgtagagaagatgcttgaaatgatcaaaggggttgactatgcaacttttgatcgaggttattcatcatcaagaagtaatcagttggaatcttcaatgggtgcccaagctatgattcagcatggaggctcagatgaaagtgtatcattcaagcctgggactgtttcagaagatgatgttattctcattgcggatgagcttggtcctttatggataaaaattggccgggtgctgaaagtctcgaaagctgtgattaatcagattgaagcagacaagtctggagtctctgataaatgctatactgtcctaactaagtggcaagagttgttcccaTatgatgcaacatatcatcgcttggcactggcattgaagcatcccGctgttggacgagtagatttggctgccaagtattgcgagctataatttaacAATTaaggatgtatcagtggctaaggatttttagtgtAtactcgttcagtgatcttgctttttcaaacaaactgattggttcactAtccctgtgtaattgagcgctggtacaagcagtgcttcgcGcctcaaccctttgtagtgacgtgaccacgttaaagtttgaaggtgatcatggtctttcttcttaggctcttagcatataaggggttacccaaaccacgtctctagaagttttagtgtttaacgaaactatgatgccgtgtcggtggagaactgaaacgcgaaaattggtgattaaagcaGttgatgaGGGCCGAATAGTTATATACTCTTAAAATAATAAGCAGACGTCTTGAGCTTTAGCCCTTCATCAAAGCAATTCACGAAGGGCTAACGCTTGAAATATGACTTTTGTAATGTTCTTACTTTAATGTCGCTTTCACGTCTTCTTTACTTCACAATTCGTCGAGCTTCCACTACCGTCCGTTGCTTTATTCACACTAGTTTTTTGAATAATCTCGGGTGCTATATAAACACCTAACATGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
D1BD84	D-inositol 3-phosphate glycosyltransferase OS=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) OX=446469 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050194 all species →	Family	Glycosyltransferase group 1	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45947 all species →	SULFOQUINOVOSYL TRANSFERASE SQD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0365.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.