Gene detail

Detailed information of amic_s0366.g5.t1 in Acropora microphthalma

Genomic Location: sc0000366_pilon:83437...120135
NR annotation: XP_044182336.1, guanine nucleotide-binding protein-like 3 homolog [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0366.g5.t1

CGACACCGCATGTACTTTTGAACGAGGGGTACTGGAAAGGAATCTGGCCGAGTTGGATCTGAGAGCCAGTCGTCCGCCATATTTCTGGAAATTGTGAAAATTCTCACGTGGACGAAAGGAATTATTCATTTTAAAGCAAAATCATCATGGTTCGACCAAAAAAACAAAGCAAGAGAATGACCTGCCGCAAGAAGTACAAGATAGCAAAAAAGGTCAGGGAGCACCATCGGAAACAGCGAAAGGAAGCTAAACGCAATGGCAAGTCAAAAAGGCTCAAGAAAGATCCAGGAATTCCAAACCTTTGTCCCTTTAAGGATGAATTACTGAAACAAGCTGAAGAAAAGAAGAGAAGGTTGGAAGAAGCTAAGGAGAGAAGAAAGGAGAATAGGTTGATGGAAGTCAATAAGAAACGAAACCTTGAAAGTCTACAGAAGGATGCTGAGAAAAGGGGGAAAGAATTTGAGAGAAAGGAAGCATCAAAGGAGAATTTTCAGTCTGATGTTTGCTCTGGTGAAAGATCAGAGAGATCACTGAAAGCATACTACAAAGAGTTCAAAAAGGTTGTTGATGCTGCTGATGTGGTGTTGGAAGTCTTAGATGCAAGAGATCCTCTGGGATGTAGATGCCCACAGGTTGAACAATCAGTTTTGTCTTCAGGAGTAAGTAAAAAGCTAGTTCTTCTACTGAATAAAATAGATCTTGTCCCTCGTGAAATTGTTGATCAGTGGTTAAAATACCTCCGCAATGAGTTTCCAACAGTTGCCTTTAAGGCATCAACACAGAATCAGAAACAGAACTTGGGTCAGATTAAAGTGTCAACATCTGTGGCATCAAGTGAATTACTATCATCCAGTGCTTGTATTGGAGCAGACACTTTACTGAAGCTTCTGGGAAATTACTGTCGCAACAAGGACATTAAGACAGCTATTACAGTAGGAGTAGTAGGATTTCCCAATGTTGGCAAAAGTAGCATCATTAACAGTTTGAAAAGATGTCGAGCTTGTACTGTAGGAGCAACACCTGGACTAACAAAGAGTATGCAGGAGGTTCAATTGGACAAGCATGTCAAGCTCTTGGACAGTCCTGGTATTGTGATGGACAGTGGCCACTCCGAGGCCTCAGTCATACTGCGCAACTGTATTAAGATAGAAAAAATTGCTGACCCAACACCAGCTGTGGAAGCTATTTTAAGAAGATGCAATAAAAAACAGGTGATGGAAAAGTACCTGGTCCCTGACTACAACGGCGTACACGAGTTTTTAGCTTATCTTGGAAAAAGGCTCGGAAAGCTGAAGAAAGGTGGAATCCCGGATACTGTAGCAGCAGGGAAAATCATCTTACGAGACTGGAACAGCGGGAAAATTGTATTTTACACTCACCCGCCTGAGCAGCACAGTCTACCCACTCATTTGTCAGCTGACATTGTGAGTGAATGGAGCAAAGAGTTTGATCTGAACTCGCTCCAGCAGCAAGAGCAATCTGAATTAGAAGGTTTACAGCACACTGGAGGTGATCATGACAATGCCATGATTCTGGAAACTGGTAGACCCGTGGACGTAACTGACGTAATGGAGGAAGTAATGGAATCTgaagaagacgaagcggtagatgaagacgaagaaagtaacgaggaatccagtgatgaagaagacgaggaggaggaagaaATGGAGGACGGTGACGGCGAGGAAGATGACATGACAGTCTATTTAAAAGCAGCAAAGGGCGTCATTCAATCTCGCAAGGACAGTAAATCTGATCCAAAACCAGATCAGATCAACGAGTTCAATCTCCATTCTAACAAAGAAAGGGAAAAGATTTTTaagaagaagcaaaaagaaagaagaaaacaagCGGCTAGTAGTATGGAAGCCATGGAGGACAGCGATGAAGATTACAACTTCGAAACTGATTTCAATTGAACATCACCAAGGACAAACCATGAATGACAACCACCAAACCAACGAATATTGGCGTTTTGAGTGTTTCAAGCTGTGTCACATAGGAAGGCTTTGAAACTCAGAAATGCGCGTTGCAATATCATTAACCTCACCAGTGTTGCACTGTTTCACAGTCGCAGATACAGCGCTTACAATTTTTCAGAAGTGGCCGGTTCGAAACAGCAAGTCCTGTCATTGTAACGCTTTAGTTCTTCCGAACTGTAAGAGCTGCTAATGACCAAGCTGGACATCCTTCCATAGCAGGGTTAGTTTGGCAAATTTTGTAGCGACATACAATTGCAGACTCAGTGATCAGACCGGCCATTTGAAAGAAAGATTTAATATGTAACTAGCACTCGCCAAACCTCTTTGACTTATAGCTATTTCTGTATTGGTGGCCTCGTAGCCCCATAAGCCTTGTGAGATATCAACGTCAAGCCAACCGCAGGTGCACAGTTTTGAAATGATTTTAACGGGAACTGAACTCCTTTTTTACGGATGGAATTCCTTTTGTTTTATGGAACCAATGTCAGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q21086	Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans OX=6239 GN=nst-1 PE=3 SV=1
Q3T0J9	Guanine nucleotide-binding protein-like 3-like protein OS=Bos taurus OX=9913 GN=GNL3L PE=2 SV=1
Q9NVN8	Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens OX=9606 GN=GNL3L PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001361 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF08701 all species →	GN3L_Grn1	GNL3L/Grn1 putative GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023179 all species →	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050755 all species →	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan
IPR030378 all species →	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR014813 all species →	Domain	Guanine nucleotide-binding protein-like 3, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089 all species →	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14538	NUG1, GNL3; nuclear GTP-binding protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.