Gene detail

Detailed information of amic_s0367.g10.t3 in Acropora microphthalma

Genomic Location: sc0000367_pilon:192698...203095
NR annotation: XP_015774227.1, PREDICTED: uncharacterized protein K02A2.6-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0367.g10.t3

ATGGAAAAAATCACAATCGGATGGATGAGTACCGATACTGGAAAGAAAACTACTCTGAAACTTCTTTTAAATGGTGCGAAAGTCCAAATGGCTATCGACTCTGGTGCGAGTGCAAACATTATGGAAGAAGTAAGATGTCAGAAAATTCAAGAAAGGTCCAACGAAACATTCCAGTTGGAGAAATCCGAAGCTAAGCTTTATGGGTATGCCAGTGAAGCTCCGATACTTGTTGCCGGAAAATTCAGTGCAATGGTTGAAACTGTCAAGAAAGCGGTTCCAGCTACCTTCATTGTTGTGAAAGGTAAAACGAAAGGTGAAATGTTGTTTGGATGTGACACGGTCATGGAGCTTGGGGTCTTGAAGATTGTAAACAGCATTGACAAAGAGGACAAGAAATTAAGACTTCTTGTTGCTGACATTGTCTCAGAATATGATTGTTTATTCAACCGTTTTGGTAAACACAATCACACCAAAGTCAAGATTCAGGTCGACGAGTCTATCACGCCAGTTGCGCAAGTGAATCGCAGGATTCCTTATCACTACCAGGACAAGTTCAAAGAACAACTCCAGAAGTTACAACAAGTAGGGGTGGTGGAGTCAGTGCTAGTTGACAAGCCGACAATTTGGATATCTCCTCTTGTCACTCAGCCCAAAAAAGCAGCTGGTGAATTACGGATATATAACAATTATTCCATGAGCCCCACTTTGAGAGCTAACCCGAAAATACCAGAAGAATGCAATTCAGACAATAGTCCACCCTTCCAAAGCAGAGTGTTTGCAGAGGATGCAAAAGCGCAAGGATTTAGACATCGGAAGATTACACCGTTACACACAGAAGCAAACGGTGAGGCAGAAAGATTTGTTAGGACCCTGCAGAAGTTCATCGTCACCACAGCAGTGGAGGGTACCAGTAGGAAGATGTCGTTGCCTGATTTTCTACGAGGGTACCGGTCAACGCCACAAGCCGTCACTGGCAGAAGTCCATGTTCTCAACTCTTTGGTGGAAGAGAAATGCGTGGCAAAATTCTTCACTTCAGCCTTAGTAGTGAAGAAAATCCTGAGAAGAAGGGAAGGATGGTAACAGCTAAAAGAACCACTGATGGAAGAATGGTCACGAGGAACACTAAGGATTTCAAGAGCTGCCCACCTTCAACAAAAGAAACAACACAAGCTACAGTGGGGGATAAGGCCGATGATACAATTGTTGTAGCGAAGCCACCGTCAACAGGGGATATAGATATAAACGAGTGTTCAAAAAATCCATGTAAGAATGGAGCGACTTGTGCCAATCTTAAAGGAAGTTATCGGTGTAATTGCAAGACTGGATACACAGGCAATAATTGTGAAAGAGATATAAATGAGTGCTCAAGAAATCCATGTAAGAACGGAGCAACTTGTGTCAATCTTAAAGGAAGTTATCGGTGTAATTGCAAGACTGGATACACAGGCAATACTTGTGAGAGAGATATAAACGAGTGTTCAAAAAATCCATGTAAGAACGGAGGAACTTGTGTCAATCTTAAAGGAAGTTATAGGTGTAATTGCAAGACTGGCTACACAGGCAATGCTTGTGAAAGAGATATAGACGAGTGTTCAAAAAATCCATGTAAAAATGGAGCAACTTGTGCCAATCTTAAAGGAAGTTATCGGTGTAACTGCAAGACTGGATACACAGGCAATACTTGTGAAAGAGACATCAACGAGTGCTTATCCAATCCATGCCATAACGGAGCGACATGTGTGGATCTTATTGGCAACTATCGCTGCAACTGTAAAGCTGGATACACAGGCGGAAACTGTGAAACAGACATCAACGAGTGTGCATCCAATCCATGCCAGAACGGAGGGATATGTGTTAATCTTGTTGGAAAATATCGCTGTGATTGTAAATTTGGATACACAGGGAGCGTCTGCGAAACAGGTAAAAATAATTGTACACCAAATCAATGCCAAAATGGGGGTACATGTGTGGATCTTGGTTCGAGCTACCAATGTGATTGCGTGGTTGGCTATGATGGAGTTAACTGTGAAGTTCAAGATATTGATGAATGCGAACTATGA

Transcript

amic_s0367.g10.t3

ATAAAGTTTTAGCAGAGAAAGTTGATCTTGTAGGCGACTCAAGTGACCAACAAGATTCGGACACATGGAAAAAATCACAATCGGATGGATGAGTACCGATACTGGAAAGAAAACTACTCTGAAACTTCTTTTAAATGGTGCGAAAGTCCAAATGGCTATCGACTCTGGTGCGAGTGCAAACATTATGGAAGAAGTAAGATGTCAGAAAATTCAAGAAAGGTCCAACGAAACATTCCAGTTGGAGAAATCCGAAGCTAAGCTTTATGGGTATGCCAGTGAAGCTCCGATACTTGTTGCCGGAAAATTCAGTGCAATGGTTGAAACTGTCAAGAAAGCGGTTCCAGCTACCTTCATTGTTGTGAAAGGTAAAACGAAAGGTGAAATGTTGTTTGGATGTGACACGGTCATGGAGCTTGGGGTCTTGAAGATTGTAAACAGCATTGACAAAGAGGACAAGAAATTAAGACTTCTTGTTGCTGACATTGTCTCAGAATATGATTGTTTATTCAACCGTTTTGGTAAACACAATCACACCAAAGTCAAGATTCAGGTCGACGAGTCTATCACGCCAGTTGCGCAAGTGAATCGCAGGATTCCTTATCACTACCAGGACAAGTTCAAAGAACAACTCCAGAAGTTACAACAAGTAGGGGTGGTGGAGTCAGTGCTAGTTGACAAGCCGACAATTTGGATATCTCCTCTTGTCACTCAGCCCAAAAAAGCAGCTGGTGAATTACGGATATATAACAATTATTCCATGAGCCCCACTTTGAGAGCTAACCCGAAAATACCAGAAGAATGCAATTCAGACAATAGTCCACCCTTCCAAAGCAGAGTGTTTGCAGAGGATGCAAAAGCGCAAGGATTTAGACATCGGAAGATTACACCGTTACACACAGAAGCAAACGGTGAGGCAGAAAGATTTGTTAGGACCCTGCAGAAGTTCATCGTCACCACAGCAGTGGAGGGTACCAGTAGGAAGATGTCGTTGCCTGATTTTCTACGAGGGTACCGGTCAACGCCACAAGCCGTCACTGGCAGAAGTCCATGTTCTCAACTCTTTGGTGGAAGAGAAATGCGTGGCAAAATTCTTCACTTCAGCCTTAGTAGTGAAGAAAATCCTGAGAAGAAGGGAAGGATGGTAACAGCTAAAAGAACCACTGATGGAAGAATGGTCACGAGGAACACTAAGGATTTCAAGAGCTGCCCACCTTCAACAAAAGAAACAACACAAGCTACAGTGGGGGATAAGGCCGATGATACAATTGTTGTAGCGAAGCCACCGTCAACAGGGGATATAGATATAAACGAGTGTTCAAAAAATCCATGTAAGAATGGAGCGACTTGTGCCAATCTTAAAGGAAGTTATCGGTGTAATTGCAAGACTGGATACACAGGCAATAATTGTGAAAGAGATATAAATGAGTGCTCAAGAAATCCATGTAAGAACGGAGCAACTTGTGTCAATCTTAAAGGAAGTTATCGGTGTAATTGCAAGACTGGATACACAGGCAATACTTGTGAGAGAGATATAAACGAGTGTTCAAAAAATCCATGTAAGAACGGAGGAACTTGTGTCAATCTTAAAGGAAGTTATAGGTGTAATTGCAAGACTGGCTACACAGGCAATGCTTGTGAAAGAGATATAGACGAGTGTTCAAAAAATCCATGTAAAAATGGAGCAACTTGTGCCAATCTTAAAGGAAGTTATCGGTGTAACTGCAAGACTGGATACACAGGCAATACTTGTGAAAGAGACATCAACGAGTGCTTATCCAATCCATGCCATAACGGAGCGACATGTGTGGATCTTATTGGCAACTATCGCTGCAACTGTAAAGCTGGATACACAGGCGGAAACTGTGAAACAGACATCAACGAGTGTGCATCCAATCCATGCCAGAACGGAGGGATATGTGTTAATCTTGTTGGAAAATATCGCTGTGATTGTAAATTTGGATACACAGGGAGCGTCTGCGAAACAGGTAAAAATAATTGTACACCAAATCAATGCCAAAATGGGGGTACATGTGTGGATCTTGGTTCGAGCTACCAATGTGATTGCGTGGTTGGCTATGATGGAGTTAACTGTGAAGTTCAAGATATTGATGAATGCGAACTATGAATTTCCAGGAAATTGGTGTATCAGGACTGACAGAAGACAGGAGCCTCATAACATTAACAGGAAACGGATAACAAAAAGAAAATAAACTTCTACTAATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007157 all species →	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0367.g10.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.