Detailed information of amic_s0371.g6.t1 in Acropora microphthalma

Genomic Location: sc0000371_pilon:88474...90415
NR annotation: XP_044178003.1, tigger transposable element-derived protein 6-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q17RP2Tigger transposable element-derived protein 6 OS=Homo sapiens OX=9606 GN=TIGD6 PE=1 SV=2
Q8BUZ3Tigger transposable element-derived protein 4 OS=Mus musculus OX=10090 GN=Tigd4 PE=2 SV=1
Q8IY51Tigger transposable element-derived protein 4 OS=Homo sapiens OX=9606 GN=TIGD4 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000106 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04218
all species →		CENP-B_NCENP-B N-terminal DNA-binding domainDomainInterproscan
PF03221
all species →		HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF03184
all species →		DDE_1DDE superfamily endonucleaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007889
all species →		DomainDNA binding HTH domain, Psq-typeInterproscan
IPR006600
all species →		DomainHTH CenpB-type DNA-binding domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR004875
all species →		DomainDDE superfamily endonuclease domainInterproscan
IPR050863
all species →		FamilyCentromere and Transposable Element-Derived ProteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19303
all species →		TRANSPOSONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0371.g6.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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