Gene detail

Detailed information of amic_s0372.g4.t1 in Acropora microphthalma

Genomic Location: sc0000372_pilon:107788...151225
NR annotation: XP_044180726.1, fibroblast growth factor receptor 4-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0372.g4.t1

ATGTGCATGTACCGGGAACTGGAAATGTCAATTTCATCGCTCTGCAAAAatggtaaccagctaacttggattgagcctttaccagttctaacagttccacaatcagattttttctgggtgattcacagaaaccacacaaggcttattgaagacaccattaatgcctccttgagctggtatttcagcttgtcatcaggtttaatcttaaacggtgtaaatttaaaattggagacagataccattgcagtggttagtaatcaaaagcaagaggtatcatcaggctataaagataaatatgctatcaactggattcccaaccaaagaatcactctggtgatcttcaaggtaacaactgaacataatgccacatttgcttgtgaagttttggcaacaggaaacggctttgcaatctggaggagtgaagttcaagtggatgttgttgttcctccaagtaacattgttgcaagtgatcaaaccataacagcaccaagggagctgactttaaactgcttagctgatggaaaaccaaccccaacaattttctggacaagagtctctgaCaacactaacgtctccatgcccttgaatatcactggggGaaagaatgaagaaagttaccgAtgtacagctgataatgggattggaaatcctttgaccaaggtcgttaagatcaGtattctgtttcctccgaaggtgatacttgcacagaaattctttgttggCcgtgaagagactgcatcacttAactgtgaagtggaaggaaacccaacacctacaAtttcttggagtccttgtgatgaaggaaatccTttctgtaataaacaatacttgaatatttctcaagtgcagtctgcacgtgccaactacatgtgtacagcaagaaatcgtgtgggaagagcctcaggaaccacagttcttcTTATTGGAGGAAAGAATATTTACTTGAGGCTGAGTGTAAGTGGAGAATGTGACAAGAATGTCTCTGTTTGGGAGACACTAGTGAAAGAGCTTCCCAGGGTCTTTCTCAGTACCACTCAAAATTACTCTGGAGCAGAACTACTCAGGGTATGGTGtggaagcctgatctttgatgtggtcttgaagttcagcactgttgttgcagaagacgaaactttttccataattcaaaatgctgcggcaaatggaaagcttggagcattaagtgtgactgtatcatattatattggaattccacctgacgaacgaactaaagccacagcaccaaccagcattacttcaaaatcagatggtttgtttcaaattctcagtgacagtgACCAATCCTCATCCAATTTGATAGTTACTGGTGTTTCCATTGGGATTGGGATTGTCATATCTGTTGTTGTCGGATTGGTGATTTTGTGGGTGCTTAGGAGAAGAAACTCGAGAAAAGAAAACACCAAAGGCGATTACGAAATGACCCCAAAAGAACGAACTGAGGAATATGAAATTTCTCCAGGAAGACTTGTCAAAactgaagatgcaccagaaagtagcatttctagacctacatatgtgaacttgcaagaggtaactctgcattctaacatggattctgatccaccccacaatgaatatgcgccacttgatttgaggacacgctcttgggaagtagcaagagaggatgtgatagtggaaaaggtcattggtaaaggtgcttttggtcaggttgccaagggaacggcaaagaacctatcgttcagatcaggcacaagaaatgtcgccattaagatgataaaagcaaatgctgctgaatcagacaaacgagacttgaaatcagaagtggagctgatgaagacactaaagcctcatccacatgtcatcaaactgctgggatgtgtcactgagtctgATGGTACCCAACTAACTTGGAATGAGCCATTACTAGTTCTAACAGTTCAAGAATCAGATTCTTCCCAGGTGGTTCACAGAAACCGCACAAGTCTTATTGAAGGCACCATTAATGCCTCCTTGAGCTGGTATTTCAGCTTGTCATCAGGCTTAACCTTAATTGGTGTAAATTTAAAATTGGAAACAGATGGCATTGCAGTGGTTGACAATCAAAACCAAGAGGTATCAGCAGGCTTTAAAGATAAATATGCTGTCAactggattcccaagcaaagaatcactctggtgatcttcaaggtaacaagtgaacataatgccacatttgcttgtgaagttgttgcatcaggaaatgccatatcaacctggaagagccacgttcaagtatatgttgttgctcctccaagtaacattgttgcaagtgatcaaaccataacagcacctgctgagttgactttaaactgcttagctgatggaaaaccaagaccaacaatatactggacaagaatctctgataacactaacgtctccatgcccttgaacatgactgggggaaagaatgaagaaagttaccaatgtactgcttacaatgggattggaaatcctttgaccaaggttgtgaagatcactattctgtttcctccgaaggttatagcacaggaagtctttgttggacgtgaggagagtgcatcacttcactgtaaagtggaagggaacccaacacctacagtttcttggagtcattgtgatctaccaaatgtgatctgtaacaagcaatacttgaatatttctcaagtgcagtctgcacgtgccaactacgtgtgtacagcaagaaatgatgtgggaacagcctcaggaaccacagttcttcTTATTGGAGGAAAGAATATTTACTTGAGGCTGAGTGTAAGTGGACAATGTGACAAAAACATCTCTGTTTGGGAGACACTAGAGAAGGAGCTTCCCAAGGTCTTTGTCAATACCACTCAAAATTACTTTGGAGCAGAACTACTCAGGGTAAGTTGtggaagcctgatctttgacgtggccttgaaattcaccactgaagttgcagaagatgatactatttccataattcaaagtgctattgtggatggaaagcttggagaagtaagcgtgaatgtatcatatatcattggaattccacgttttcctcgagctacatatacaatcacaacaccaaccagcactactccaaaatcagatgAAATGTCCCCAAAAGAAAGAACTGAGGAATATGAAATTTCTGCAGGGAGACTTGTCAAAgctgaagatgcaccagaaagtagtatttctaggcctacatatgtgaacttgcaagagataactctgcattctaacatggattctgatccacccaacaatgcatatgcgcctcttgatttgaggacacgctcctgggaagtagcgagagaggacgtgatagtagaaaagatcattggtaaaggcgcttttggtcaggttgccaagggaacggcaaagaacctatcgttcaggtctggcacaggaaatgttgccattaagatgataaaagcaaatgctcctgaatcagacaagcgagacttgaaatcagaactggagctgatgaagacactcaagccgcatccacatgtcataaaactgctgggatgtgtcactgaatctgTGTTAGACGAGATCAAGGTCACCTTAAATGAAGTAGAGAGAAAGAGTCATGTTATAACACCAACGTCTGAATGGGATGATAACGTTAACGATGATGACGACAAGAGAGAGAGGGGCAGAGACAACTAA

Transcript

amic_s0372.g4.t1

TATCATTTACTTGTACGAGTTGACTTTATATTAGAATGTGCATGTACCGGGAACTGGAAATGTCAATTTCATCGCTCTGCAAAAatggtaaccagctaacttggattgagcctttaccagttctaacagttccacaatcagattttttctgggtgattcacagaaaccacacaaggcttattgaagacaccattaatgcctccttgagctggtatttcagcttgtcatcaggtttaatcttaaacggtgtaaatttaaaattggagacagataccattgcagtggttagtaatcaaaagcaagaggtatcatcaggctataaagataaatatgctatcaactggattcccaaccaaagaatcactctggtgatcttcaaggtaacaactgaacataatgccacatttgcttgtgaagttttggcaacaggaaacggctttgcaatctggaggagtgaagttcaagtggatgttgttgttcctccaagtaacattgttgcaagtgatcaaaccataacagcaccaagggagctgactttaaactgcttagctgatggaaaaccaaccccaacaattttctggacaagagtctctgaCaacactaacgtctccatgcccttgaatatcactggggGaaagaatgaagaaagttaccgAtgtacagctgataatgggattggaaatcctttgaccaaggtcgttaagatcaGtattctgtttcctccgaaggtgatacttgcacagaaattctttgttggCcgtgaagagactgcatcacttAactgtgaagtggaaggaaacccaacacctacaAtttcttggagtccttgtgatgaaggaaatccTttctgtaataaacaatacttgaatatttctcaagtgcagtctgcacgtgccaactacatgtgtacagcaagaaatcgtgtgggaagagcctcaggaaccacagttcttcTTATTGGAGGAAAGAATATTTACTTGAGGCTGAGTGTAAGTGGAGAATGTGACAAGAATGTCTCTGTTTGGGAGACACTAGTGAAAGAGCTTCCCAGGGTCTTTCTCAGTACCACTCAAAATTACTCTGGAGCAGAACTACTCAGGGTATGGTGtggaagcctgatctttgatgtggtcttgaagttcagcactgttgttgcagaagacgaaactttttccataattcaaaatgctgcggcaaatggaaagcttggagcattaagtgtgactgtatcatattatattggaattccacctgacgaacgaactaaagccacagcaccaaccagcattacttcaaaatcagatggtttgtttcaaattctcagtgacagtgACCAATCCTCATCCAATTTGATAGTTACTGGTGTTTCCATTGGGATTGGGATTGTCATATCTGTTGTTGTCGGATTGGTGATTTTGTGGGTGCTTAGGAGAAGAAACTCGAGAAAAGAAAACACCAAAGGCGATTACGAAATGACCCCAAAAGAACGAACTGAGGAATATGAAATTTCTCCAGGAAGACTTGTCAAAactgaagatgcaccagaaagtagcatttctagacctacatatgtgaacttgcaagaggtaactctgcattctaacatggattctgatccaccccacaatgaatatgcgccacttgatttgaggacacgctcttgggaagtagcaagagaggatgtgatagtggaaaaggtcattggtaaaggtgcttttggtcaggttgccaagggaacggcaaagaacctatcgttcagatcaggcacaagaaatgtcgccattaagatgataaaagcaaatgctgctgaatcagacaaacgagacttgaaatcagaagtggagctgatgaagacactaaagcctcatccacatgtcatcaaactgctgggatgtgtcactgagtctgATGGTACCCAACTAACTTGGAATGAGCCATTACTAGTTCTAACAGTTCAAGAATCAGATTCTTCCCAGGTGGTTCACAGAAACCGCACAAGTCTTATTGAAGGCACCATTAATGCCTCCTTGAGCTGGTATTTCAGCTTGTCATCAGGCTTAACCTTAATTGGTGTAAATTTAAAATTGGAAACAGATGGCATTGCAGTGGTTGACAATCAAAACCAAGAGGTATCAGCAGGCTTTAAAGATAAATATGCTGTCAactggattcccaagcaaagaatcactctggtgatcttcaaggtaacaagtgaacataatgccacatttgcttgtgaagttgttgcatcaggaaatgccatatcaacctggaagagccacgttcaagtatatgttgttgctcctccaagtaacattgttgcaagtgatcaaaccataacagcacctgctgagttgactttaaactgcttagctgatggaaaaccaagaccaacaatatactggacaagaatctctgataacactaacgtctccatgcccttgaacatgactgggggaaagaatgaagaaagttaccaatgtactgcttacaatgggattggaaatcctttgaccaaggttgtgaagatcactattctgtttcctccgaaggttatagcacaggaagtctttgttggacgtgaggagagtgcatcacttcactgtaaagtggaagggaacccaacacctacagtttcttggagtcattgtgatctaccaaatgtgatctgtaacaagcaatacttgaatatttctcaagtgcagtctgcacgtgccaactacgtgtgtacagcaagaaatgatgtgggaacagcctcaggaaccacagttcttcTTATTGGAGGAAAGAATATTTACTTGAGGCTGAGTGTAAGTGGACAATGTGACAAAAACATCTCTGTTTGGGAGACACTAGAGAAGGAGCTTCCCAAGGTCTTTGTCAATACCACTCAAAATTACTTTGGAGCAGAACTACTCAGGGTAAGTTGtggaagcctgatctttgacgtggccttgaaattcaccactgaagttgcagaagatgatactatttccataattcaaagtgctattgtggatggaaagcttggagaagtaagcgtgaatgtatcatatatcattggaattccacgttttcctcgagctacatatacaatcacaacaccaaccagcactactccaaaatcagatgAAATGTCCCCAAAAGAAAGAACTGAGGAATATGAAATTTCTGCAGGGAGACTTGTCAAAgctgaagatgcaccagaaagtagtatttctaggcctacatatgtgaacttgcaagagataactctgcattctaacatggattctgatccacccaacaatgcatatgcgcctcttgatttgaggacacgctcctgggaagtagcgagagaggacgtgatagtagaaaagatcattggtaaaggcgcttttggtcaggttgccaagggaacggcaaagaacctatcgttcaggtctggcacaggaaatgttgccattaagatgataaaagcaaatgctcctgaatcagacaagcgagacttgaaatcagaactggagctgatgaagacactcaagccgcatccacatgtcataaaactgctgggatgtgtcactgaatctgTGTTAGACGAGATCAAGGTCACCTTAAATGAAGTAGAGAGAAAGAGTCATGTTATAACACCAACGTCTGAATGGGATGATAACGTTAACGATGATGACGACAAGAGAGAGAGGGGCAGAGACAACTAAATCTAtaacttgcttcttctcctaaggtatcaaatcatgatgaattgttggcaaagtgaacctgaaatcaggccatcattcgctgatttaacgcaacaactgaaacaaatggaaaaccagcacaagaggttgctcaacatgcatctataCGACAATGCAATGTATGCAAACTTGGAAGACTTAAACGCATAAAAAGAAAATGACTGCATTAAACCTCCATGAATGGCTGTTATCTCTCTTCGTCAATAAAATTACAGGAATGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05030	Platelet-derived growth factor receptor beta OS=Rattus norvegicus OX=10116 GN=Pdgfrb PE=2 SV=2
P05622	Platelet-derived growth factor receptor beta OS=Mus musculus OX=10090 GN=Pdgfrb PE=1 SV=2
Q9VBW3	Tyrosine kinase receptor Cad96Ca OS=Drosophila melanogaster OX=7227 GN=Cad96Ca PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000023 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640 all species →	NEPHRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0372.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.