Gene detail

Detailed information of amic_s0401.g3.t1 in Acropora microphthalma

Genomic Location: sc0000401_pilon:139215...167515
NR annotation: XP_029208235.2, vacuolar protein sorting-associated protein 33B-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0401.g3.t1

ATTTAGTGAAAATCCTTGAGTCGGTTCCTGAACCAAAAGATCTTGTGATAGATCCTCAGCTTATGAAACCTCTGGATCATTTTACTGGGGCTTCATTCCTAAAGGAACATGGTGTGAGCAAGATATTTAAATTAGAAGAGCGGCTTGATGCTGGATGTGACAAGAGGATTTACTTGCTGAGACCAGAGTTATTACTAACAAAGTTTGTGGCTGATCATGTTAACAATGACAAGAAAAGTGGGAAAAGCAGATCATATAAAATAGTATATGTACCTAAAAAGTTGTATGTCTGTGAGATGATTTTGGAGCAGGAGGGAGTTTATGGAGATGTGTCACTTGAAGAATTTAAACTGGAGTTTATTCCCTTGGATGAAGATGTCTTAACTTTAGAGTTACCTAGCTTCCTTAAAGATTATTTTTTGGAAGGGGACCAGACACCAGTTTCCTTTGTTGCTCGTGCCCTTGCAACTTTGCAGCAACTTTATGGTGCTATACCAACTATTTATGGGCTCGGGAATTGCGCCAAGATGGTGGGAGAGCTGTTAAAGAACATTGCGGATGAAGGAGGAGAATATGAACCCGATGATCGAAATCAAGAAATTGGTTCACTTGTCCTTATTGACCGAGAGATTGACTTTATCACACCAATGTGCTCTCAAGTTACTTATGCTGGTGTTGTTGACGACTCTTTTGGAATTAAAAGTGGTGTTGTAGAGTTTGGTCCAGAAGTGACAGGGAAAGATCAAACAACCAAGATGCTACTGAATGATCAGGACAAGGTTTTCAGTGAGATCAGGGATCGGCATTTCTCAAACGTGTTTGGTTATTTAAGTCAAAAGGCAAAGGAAGTGCAATCAGGGTATGATAAACGACAACACTTGTCAACTGTACGCGATGTGAAACAATTCGTATCAGATGAACTGGGAGGATTACGACAGCAACACAAAGGCTTAACTATACATATTGGCGCATGCGAGGCAGTACTGAAGGCCAAGACAAAAGAGGACTTTGAAAGACGCCTTCGTGCAGAACACGGTTTGTTGGAACTAGTTGAAGATAAAAGCGATATAGAATACGTGGAGAATTGCATCATAAAACGGGTAAATGTATATAAAACAATGCAGATTATGTGTCTTCTCTCACTAACCCGTGGTGGAATTGAACCCAAACTTTGCCAAACTTTAAAGCACAGGTTTCTTCAGAGTTTTGGCCATGAACACATGCTCACCTTCAGCGCACTCAAACAGCTTGGACTTTTCACTGAACTTGATGCACAGAAGAAAAACTTATTCAAGAATTTGATCAAACGACTAAACCTGATACCAAAGGATGCTGGTAAAGTTGACTTAAAGAATCCAACCGAAATGGCGTATGTATTCAGCGGTGCTTACACACCAATTTCCTGTAGACTTGTGGAGCAGGTTCTCTCTGATGGACTTCCTTTGTTTGAAGAGATTTCCAAAGTGTTTGGTGTGGCTGCGTTCTCGTCTCGGATGACTTCGTCTGCACGATCAAATTCCTCAGCAAGCGGTGTTCTTAAAAGATCGAAATGCGTGCTGGTCATGTTTCTGGGTGGATGTACATTCTCGGAGATCTCTGCAATCAGGCTTCTGTCCAATAAACTAGGTTACCGTATTATTGTCGGTACTACAGCTATAATCAATGGCACACGACTTTTGGAATCCATTTCAACGTATTAAGAGAAATGCAAAGTGGCCATTACCTCTTTAATAGGATGAAGGACTATGGGCAAGGTATTTTGGGATCATTGGATCGCTCTGTTCCAGTTATTCGGCTCCCGCGTCAGGGCTCCAATTCCCACGTGCTGTGTGGTCCGGATCCCGAAAATAGGTACCTACAAACGCGACTAGCCTCGTCGCTCGTTTTCCTCTACCTTGTGTCAGTGACCCGAGTATAAGAAGACAATTTTAGCTGTGGATTACTAACCGATTGACCAGTAATCTCCTTTCTTCTCTATTGCTCCTTCGGAGTAATAGTTCCTAGAATCAACACTGCTGATGTTATTCGCCCAGGAGGTATTTGGAGCCATTCGATCGCGACCTTCTGAGGTTATCCGTTTTCCCCGCTCGTTTCAGTTCTTCCGATTGATTTGTGCTTCCTTCTTTTATTCAAGCGAATTGGCAATCTCTGAGCGGTTTAATCAAATGGCTTACCGTGGAGATAGCGAATTTGTGAGAAATGACCTCTCCACGCCCTTCTTTCTAGTGACAGCAATAGTTGCTATCTGGTTCCACTTTTCAATTATTCTGTTTATACCTTAACCTTCGTCGTCCTTGTTTGGAGAGAAATTAGCTTTCCCTGGAACATAGTTGATCGGTCTCTATTGTTATCAGTTAAAGTTCTAAAAAGTTTTAGCGATAAAAAATGGTAGAAGACGACGTTTCGACTACTACTTAATCTTCGGTCATTATCATGTTAGTGATGAGAATAAAATATACAAGTCAAAGGAGTAAAAATATGGAATAACGTATGAGTATTTAGAAACACGTGAAAAAAAAGGCAAAGAAAAGGGCTAATTAAAAAGCCTTGCGCGAATTGAGTCAGAACAGATAAATTGTAGAGATAAATTGTAGAACACATAATTGTAGAACAGTTAAATTGTAGAGGCCTCTGAGGGGTCTTCTTTCAATTATTAAGTGCTCCCTCCTTTGTAGTAATTGTATTGTAAAGTTACAGCAGGGCAATTATTTTTGCTTGGTATCAAATCTGCAGTGGATGTAATACAGACACTTAAACTGTAAGAGTTCATATTTTGATTAACCCACTTGCTGATACCAAATCAGAAATACCCTAATGTTGTCACAAAGCGACATAATAAAAGTACACTAATCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63616	Vacuolar protein sorting-associated protein 33B OS=Rattus norvegicus OX=10116 GN=Vps33b PE=2 SV=1
Q9H267	Vacuolar protein sorting-associated protein 33B OS=Homo sapiens OX=9606 GN=VPS33B PE=1 SV=2
P59016	Vacuolar protein sorting-associated protein 33B OS=Mus musculus OX=10090 GN=Vps33b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00995 all species →	Sec1	Sec1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036045 all species →	Homologous_superfamily	Sec1-like superfamily	Interproscan
IPR001619 all species →	Family	Sec1-like protein	Interproscan
IPR043155 all species →	Homologous_superfamily	Vacuolar protein sorting-associated protein 33, domain 3b	Interproscan
IPR027482 all species →	Homologous_superfamily	Sec1-like, domain 2	Interproscan
IPR043154 all species →	Homologous_superfamily	Sec1-like, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11679 all species →	VESICLE PROTEIN SORTING-ASSOCIATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0033263 all species →	Cellular Component	CORVET complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23281	VPS33B; vacuolar protein sorting-associated protein 33B	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.