Gene detail

Detailed information of amic_s0401.g5.t1 in Acropora microphthalma

Genomic Location: sc0000401_pilon:171387...181815
NR annotation: XP_015773075.1, PREDICTED: eukaryotic translation initiation factor 3 subunit J-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0401.g5.t1

TTGTAGCCCGTCTGGTAGTGGGAGAGACATCAGTGTTTTCAATTATCCCCTCTCCCATAGCGCGCGTTTCATCAAAATGGCGGATTGGGACGACGAAGAGTTCGAACCTCAAGATTTTGGTGTTAAACAATCGGACAAATGGGAAGGAGAGGATGAGGATGACAACGATGTGAAGGAAAACTGGGATGATGAGGATGAAGATGACACGAAAGAGAAACCAGAGAAGACGGAAAATGAAACCGACCAAGCAACCCCTCAAGAAAAGGTGAAAAAGAGAAGAACAATCAAACAAGTTTTGAAAGAAAAAGAAGAGAAAGCTAATGAGGAAGCTCTCTTAACAGAACAAGAAAAACAATTGCAGAAAGAGGAGGAGGTGAAGCCATTAACAGAAGAAGAACAATTAGCAGAAAAGCTCAAAAGACAAAAATTAGTTGAGGAATCAGATTTGGAACTAGCTAAGCAAGCTTTTGGTGTACAGGATGTATCAGAAAGCAAAAGCATAGATGGAATGAACCCTAGCACAAAAGAAGACTTTGAGGAACTTAGTAAATTAATCGTAGGAAAATTATCAAATTATCAGTCAAGTGCTGAGTATGTACCTTTCTTGGAAACACTGTTTAGAGATTTATGTGTCAGTTTGGATGCTGAGGAAATCAAAAGGCTAGGTAGTGCAATAAATATCCTATCAACAGAAAAATTAAAAGCTACTCAGAAGACAAAGAAAAGTAAAAAGGCAGGCAAGAAAGTAACATTAGCAGGTAGCAGTGCCAAAGCTGGTAGAAGAGATAACTTTGATGCATTTGGTGGTGGAAATTACAATTATGGCGATGAATTTGATGACTTTATGTAAAGTTCAAATGGGTAATGGAAGCATTCACTCCAAAAAATAATTTGTTCCTTTGATGCTGAAACCAATAAACCAGCACATCATACTTACCAAAATTAGTTGTTAACTGGGAGAGAACTTTTTTTTCCTTTGGTTAATTATGCAAATCCAATTATGGGCAATTATTAATTATGTGCTCAAGTAGCACAAGTTTAATGTTATCAGGTTTTGACAGAACCTTCTATTTTTGGCCTTTTTTCTTTAATTTTGCTAGGCTGCATTCAAATGGAAAATTAGTACTTTTGCTTATCAGTTGCATTTTTCATTCATGTCTGTCTCAAAATCTGTAAGGAAGAGGCATTCATATATCATTGGCTGGCTTTCCATTTTCAATAAGGATAAAAGATCAGTAAGTTATTAACAATGGACGACAACAAGTTAAGATAATCAAAAGATCCTTTTTATTTATGTCAAATTGTATTTTCACCCTTAAGATGTTGCGTATTTTTTGTCCAATTGAAAGGTGGCAAGAGTAAGAGTATACAGTGGAAGAAAAAGGAATTATTATTTTAGGCTTTCGTCACTCTTTTGCAGATAATGTTTGCGCAAAATTTGACCCTATAGTACTTGCAAAATGCAAAGAGTTAATCACATCTGGGTTTACTGCATGCTACTTTACTCTCATGCATGGTAATAAACTGTAGGATATACACAGTAGGGGTCAGCCACAGTTGGTTGATGCTTGGCCAAATACATTGTTATGCTTGCTGACTTCAGGGATGAGGTTCCTCCTCCAAAATATTCAAAGTGGAATTGAACTCAGCCTGTGAATGAGAATTTTAGTGACATTTTGTCGTTGACATAGAATTGGGTTCAAAGCTTACAACGTACTATTTGTGCAGTCAAATACTACAATGTGTTGTGGAAGTTATTATTATTAATGCTGGGCAAACTTCTGTAAGGAAAAATGAGTCATTTGTGCAGAGGTAATTTTGCGTCTGCAAGGTTAGTATAGTTCAAGTCAAGGAAAATGTCCAGGGCATTCTGAATTCAAAATTTTGTTTCCTCTTGACTTCACACCAGTCCAACTATTAATGAATTTGATGTGCCAACAGGAATGAATTTGCCTGTGTTGTGGAATATCCCTTGCAAAACAAACTTAACCTGGAAGGAAAATTACTCTTGAACCCACAACAGGCTAATTAGTATTTTACAGAGAAGTGCAGTATGCTTCTGTTGTAAGTGTTTTTGCTCTATGTAACTTGAAGTTAATTAAAGATAATGCTATTTTGGACTGACAGCTTCAGCGTTTGCCGATGTTATCACTGTAACTTTTCTCTATAGTATTTGGTGAAAATTCTGAAGAAATAGATGTAGTTTTCTAAATAATAAATAAAGAAAAATCAACATGGCTGTGTGAAATCAATAATTATTTCTTGTTTCTGGTACATAGCTGCAGCCACACTAATTTTACCAGAAATATTTAAATGCAAAAAGTATCATAACTGGATTCCAGGTGCCCTTGGCATAGAAGTGATAGACCAAAATGAGATACCTTGTGCCCTACTTTTCTTTGTGTGGGAAGTCCTGTGAAATGTGGCCTCAATGGTCTGGGTCCTTAGCTTGGGGTGCATACCATTTGTGAAAACTCCACAACTAGGTTCACTGACCAGCATGTGGAATGGCAAACGTATTTGtatttagcttcaccagtttttctggctgggatgccactatagcgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RSH7	Eukaryotic translation initiation factor 3 subunit J OS=Nematostella vectensis OX=45351 GN=v1g240395 PE=3 SV=1
Q7SXU0	Eukaryotic translation initiation factor 3 subunit J-A OS=Danio rerio OX=7955 GN=eif3ja PE=1 SV=1
Q6INR1	Eukaryotic translation initiation factor 3 subunit J OS=Xenopus laevis OX=8355 GN=eif3j PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006678 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08597 all species →	eIF3_subunit	Translation initiation factor eIF3 subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023194 all species →	Homologous_superfamily	Eukaryotic translation initiation factor 3-like domain superfamily	Interproscan
IPR013906 all species →	Family	Eukaryotic translation initiation factor 3 subunit J	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21681 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03245	EIF3J; translation initiation factor 3 subunit J	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.