Gene detail

Detailed information of amic_s0402.g2.t1 in Acropora microphthalma

Genomic Location: sc0000402_pilon:111986...116851
NR annotation: XP_029202743.2, uncharacterized protein LOC114966925 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0402.g2.t1

ATGAAAAGTCCGCCGGTTTCGGCGATGTTTACGGCGGCATTGCTAACCTTCCTTCCTAGCGTTTCGTGTATTCTTTGGCCCTGGCAAAATCCTGTAGATGGACAATGGAGTTCTTGGACAGCGTGGAGTTCTTGCCAAAATATCTCTTCTCGCGAGTCGTTTCCTTTTCGTTTTAAACAAAGAAGTTGCTCAAATCCTGCACCGAAACACCGAGGCGAGTATTGTAAGGGAGAGAGCCGGCGACTTTCGCCTTGTGTTGATTGTAATTTACCGTTGGGCTTGGAAAATGGCCGTGTTTCGAATTCCTCTATCACAGCATCTCATTCCCACAAGGACTTCCCAGCTTCATCGGCAAGATTGAACGGGAAATCCGCTTGGTGTTCCATGATTCCCAAAGGGACATTGTATCTGCAAATTGACTTAGGAAAAATGACGTCTGTTACAGCGATAGCATCCCAAGGATATTATCCGCCGGAAGAAGAAATGTCGCTTCGTTTAGGCCGCGTTAGTAAATATGAACTTATGTACAGTACAAGTGGACGTTCTTGGCATTTATACAACGATAGTGAAAACAAAACCGTATTACGCGGGAACGCAAAGCGAAATGGTACAGTGCTGAATATACTTTCGCCTGAGATCACCGCGCGATTTATCCGAGTTTACCCGATAAGCTACTTTACGTTTGTTTGCATGAGGTTAGAGCTATATGGATGTGCATTCGCTTGTGGTGCAGCCCTGGGTGCTGAACCAGGGAGTATTATGACAAAGAGCTCCCCACTTATGGACCAAGATTGTTTGTGGCATGTCCATGTTCCAAACATAACGAGTCTAAACATGGACTTTATAAACTTTAATTTGCCTTGCAGTAATGGTTTCGCAGAGTTTAGAGATGGGGGTATGCCATATTCTTCGGCCAAAGTCCTTGCCCATTATTGCGGTGTGGACAGCCTCCCCCCGCTCATCAGTGCCACTAGTGGTCAGCTGTGGGTGCGATTCAAATCGAACGCATCTAGTCCACAAGTTGGATTCTATTCCATTTACTTTCCTGGTTGTGGAGGAAATGTTGATGGAAGCAGTGGTGAAATCAAGTCGCCAAACTTTCCAAATGAGTATTTTCACAATTCAAAGTGCACCTGGACTATTACAGTGCCAGAGAGAAAATCTGTGCACTTGAAGTTTATCAAGTTCGAAATTGAAGGGGATATAAACCGGCAGAGATGCCCGCATGATGCTCTCAGCGTATGGAATAGCTCTGATTCAGATGGCGCACTGATTGGAAAATATTGCAACAGCAATCCTCCTCCTTCTGAAATCTGCAATGCGGGAAACACCATGAGGATAAAATTCCACAGTGATGATGCACTGGCATATGGAGGATTTTTTATCATGTTTCGGGCAGTTGATCCTCTGTCACCGTGTAATGAATTGTCTTCTATAATTACGTCAACACCCTCAAGGATTTCAACAATGGTGCAGATGAGCCCAACTCCTTCAATAAGCAGTCAAACTGTTTTTGCACAGGAGCCCATATTGCGCATGAGTGATCGTCTTTTAGGACTAGCTACAAAAACCTCAGCAATAGGACCACCTACAAAAACCTCAGCAGTGAAGCAAATACTCATGCCTTTCTCTACTTCTGTGGTGATAAATAAGACATTTAGTTTCCCAGGAGTTTCTTTGAATGATGACCTGAGAGCTGTGGCTCAGAAGGCACAAAAAGATGATGGTGAAGGCGATGGCTTATGGTCTGTAGTAATACTATCCATTTTGTCATTTGTAGTTTTGTGCATGATAGTTGCAAGTATTATTCCCAGTGTGAAAAAACACTATGAGACTCAAAAATTGGAAAAAGAAATGAACTCTTTGGTTACAACACCCATGCTTGCTCTCTGTACCAACAGTAGGGAAGGCATTCAAGGTGGACAAGGATGTGTGCGAGAAAGTTCTGCTTGTGAAGATGAAGCGAGTATGCAATCTGTTGATGCCGCACAAAATGAGTCAATTCCTGAAAAACCAGAAGCTGATCAAATGCTTGCTGCAAGTGCTAAATGTAGCTGTAGTGTAGAAGAAGTTGATGATCTGGAGGAAGGACATGCAGAGAAAGATGTGTACATTTTGAatgatgatgatgatgacagtgatggtgaCAGTAGAAGTAATACACCTGAAATTAGCAGTTTGAAAATGTCAAATGATGATCTGGCCAGCTCCTTTGCTCAGGAGATGCAACAAATGCTGGGCCAGTTTCTGAAAGATGATATGCAACAAGGCTGGGATCTTGACGTGTTGTCCACACCAAGGCAGTCCTTGGAGAGTCAGCCCATAGCCGACAAAAATATTCCTCAAGATGACTTACCTGTCGAAGAAAAAAGGAACATGTCCCCCAATGACCTAAGAAGTAAAACAGATGAACCTCATTGTACTCATCCAAACTCAGACGAGACAAGTATTTAG

Transcript

amic_s0402.g2.t1

TTCTAAAATTTGCTGATGTCTTGGAAAAAGACAATCACAATTCAATTTTTCTTTTTGAATAAGAGGTGACTGGGTCTTCCTCTGAAACAATACGAAATGCATGCATGATGTTCTTGAGGAACAAAAAGTAGAAAGAAAGGTGAGAAAGGTAAATGAAAACAGGAGGAAGAGTATCCCAAATCGGGCATGTTTCCTGTTTCGTCGAATAGAAGCTCTTGCCACCACGCGAGACTTCACATCACATCACATGCCACATTGTCTTCTTCTAATTGGTTACAAGGTTGTGAACTCCGCCCAATGCTTTGCTGTAAACAATACTCTCCAGCTGAAGGCTTTTCGGTCCAAACTTCATTTAATTTGCTATTCAGCGATTGAAATCGATCGCTAATATCGGCCCCTGAGGTTTTCTTCTTCTTGTAAAGTAGAAGGTAAACAACTAAGCTTGGGTGTAAACATTGCTGTTTTGGTGGAGTTCAAGTCCAAGGATATCAACAATTCAATTGCCGTCTAGATTCAAAAGTTATTTGGTCATTCTTTATAATTATAACGAAGTGGTTCTCATCATGAAAAGTCCGCCGGTTTCGGCGATGTTTACGGCGGCATTGCTAACCTTCCTTCCTAGCGTTTCGTGTATTCTTTGGCCCTGGCAAAATCCTGTAGATGGACAATGGAGTTCTTGGACAGCGTGGAGTTCTTGCCAAAATATCTCTTCTCGCGAGTCGTTTCCTTTTCGTTTTAAACAAAGAAGTTGCTCAAATCCTGCACCGAAACACCGAGGCGAGTATTGTAAGGGAGAGAGCCGGCGACTTTCGCCTTGTGTTGATTGTAATTTACCGTTGGGCTTGGAAAATGGCCGTGTTTCGAATTCCTCTATCACAGCATCTCATTCCCACAAGGACTTCCCAGCTTCATCGGCAAGATTGAACGGGAAATCCGCTTGGTGTTCCATGATTCCCAAAGGGACATTGTATCTGCAAATTGACTTAGGAAAAATGACGTCTGTTACAGCGATAGCATCCCAAGGATATTATCCGCCGGAAGAAGAAATGTCGCTTCGTTTAGGCCGCGTTAGTAAATATGAACTTATGTACAGTACAAGTGGACGTTCTTGGCATTTATACAACGATAGTGAAAACAAAACCGTATTACGCGGGAACGCAAAGCGAAATGGTACAGTGCTGAATATACTTTCGCCTGAGATCACCGCGCGATTTATCCGAGTTTACCCGATAAGCTACTTTACGTTTGTTTGCATGAGGTTAGAGCTATATGGATGTGCATTCGCTTGTGGTGCAGCCCTGGGTGCTGAACCAGGGAGTATTATGACAAAGAGCTCCCCACTTATGGACCAAGATTGTTTGTGGCATGTCCATGTTCCAAACATAACGAGTCTAAACATGGACTTTATAAACTTTAATTTGCCTTGCAGTAATGGTTTCGCAGAGTTTAGAGATGGGGGTATGCCATATTCTTCGGCCAAAGTCCTTGCCCATTATTGCGGTGTGGACAGCCTCCCCCCGCTCATCAGTGCCACTAGTGGTCAGCTGTGGGTGCGATTCAAATCGAACGCATCTAGTCCACAAGTTGGATTCTATTCCATTTACTTTCCTGGTTGTGGAGGAAATGTTGATGGAAGCAGTGGTGAAATCAAGTCGCCAAACTTTCCAAATGAGTATTTTCACAATTCAAAGTGCACCTGGACTATTACAGTGCCAGAGAGAAAATCTGTGCACTTGAAGTTTATCAAGTTCGAAATTGAAGGGGATATAAACCGGCAGAGATGCCCGCATGATGCTCTCAGCGTATGGAATAGCTCTGATTCAGATGGCGCACTGATTGGAAAATATTGCAACAGCAATCCTCCTCCTTCTGAAATCTGCAATGCGGGAAACACCATGAGGATAAAATTCCACAGTGATGATGCACTGGCATATGGAGGATTTTTTATCATGTTTCGGGCAGTTGATCCTCTGTCACCGTGTAATGAATTGTCTTCTATAATTACGTCAACACCCTCAAGGATTTCAACAATGGTGCAGATGAGCCCAACTCCTTCAATAAGCAGTCAAACTGTTTTTGCACAGGAGCCCATATTGCGCATGAGTGATCGTCTTTTAGGACTAGCTACAAAAACCTCAGCAATAGGACCACCTACAAAAACCTCAGCAGTGAAGCAAATACTCATGCCTTTCTCTACTTCTGTGGTGATAAATAAGACATTTAGTTTCCCAGGAGTTTCTTTGAATGATGACCTGAGAGCTGTGGCTCAGAAGGCACAAAAAGATGATGGTGAAGGCGATGGCTTATGGTCTGTAGTAATACTATCCATTTTGTCATTTGTAGTTTTGTGCATGATAGTTGCAAGTATTATTCCCAGTGTGAAAAAACACTATGAGACTCAAAAATTGGAAAAAGAAATGAACTCTTTGGTTACAACACCCATGCTTGCTCTCTGTACCAACAGTAGGGAAGGCATTCAAGGTGGACAAGGATGTGTGCGAGAAAGTTCTGCTTGTGAAGATGAAGCGAGTATGCAATCTGTTGATGCCGCACAAAATGAGTCAATTCCTGAAAAACCAGAAGCTGATCAAATGCTTGCTGCAAGTGCTAAATGTAGCTGTAGTGTAGAAGAAGTTGATGATCTGGAGGAAGGACATGCAGAGAAAGATGTGTACATTTTGAatgatgatgatgatgacagtgatggtgaCAGTAGAAGTAATACACCTGAAATTAGCAGTTTGAAAATGTCAAATGATGATCTGGCCAGCTCCTTTGCTCAGGAGATGCAACAAATGCTGGGCCAGTTTCTGAAAGATGATATGCAACAAGGCTGGGATCTTGACGTGTTGTCCACACCAAGGCAGTCCTTGGAGAGTCAGCCCATAGCCGACAAAAATATTCCTCAAGATGACTTACCTGTCGAAGAAAAAAGGAACATGTCCCCCAATGACCTAAGAAGTAAAACAGATGAACCTCATTGTACTCATCCAAACTCAGACGAGACAAGTATTTAGTGTGAAATCTGAAATATTACCATCATCACTGGTTTAATTGCCTATCACTTCAACAAAGCCTTTGTCTACAAGAATCATTATTATTTTAGGAACTATTCCAAACTTATTTTGTAACTTTCTAACCCAGTATTTCATATTTTGAAACTTTCTAACCCTATGTTTAGAATAGCCACTTCCTGTTTACAGCTATAAGATTAACATTTTGAGAATCAAGAAGCAGACCACAACTTTGAACTTGCTGCAGAGCTAAGAAAGCAACAGAATACGTTTGCAGCAAGTGACAAAATTTCAATAGCATGTAGTCTGCCATTTTTGAAGCGACTGACATTTGATTTGCAGAAGTGCTATCTTTTTTCCTTTTTGTTTTTGCCTTTGCTTTTTCAAACACTGATGTAAATTATATAGCATATGTTAGGGTGAATAACCAGTTGCTTTTGAGTTTTTGCAAAGATTGGAAATTCATGGTGCACCCCATGTAAGGataatagtagtaacaataacattgtgacaataacaataatagcagtagttgaagtaataacaataataataatgatgatgatGTTAAATttaacaaattgacgtcagtttttcatgcttctgtcctgttattgatcatgaatttcgtcataacattgtcaaagtagctgcggatccacttggctatcgcctcgtggatccacagctactttgacaatgttatgatgaaattcatgatcaacaacaggacagacgcgtgaaaaactgacgtccatttgttttttacaataacagaaagctagtagggacaaaattaagtcaaaacgcaagatgaaaatgcacgagaaacttcaaagtttattcaatctgacgcgaccaaattcataattctcctcgcactcttattggctaatggaaaaaaaacggacactttctattggttaaaaagtgacagatcgacttatcaaattttctgctctcgctcgcataaattataaatttcatgtgtctgtccgcttattgacaataaaaattagccaacaagctcgcgaggactctgcagttattgtaaaaaTTGTGATGATGATGATAATaagaatttcagtgtatgatccttgcagttattggtgctatttaagtagaagtgagaaaggcctgaaAAGTTCATGCCTTAATAGGATATTTCTTTCCAACTACAAAGATCATTCACTGAAAATTCATTGTAATCCTCAGTTGGGAAAAGTGAATTCATTTCTTAACATCTTTTATTTTATttatttttcacatggcctattttcgtttgctcttctaggctgatcatattgaataaaccctgctaattagcaactttcttaaaagttaggggaatattattgataatgcctcaggtgaaaatcaccaaagtattccccttgcagcacacccacatgcgtcacatttaatgcactgacaaagaggaccacaactttacttcaacaatgttacatttattttaccaaaactgaaattcgaaacatgagaattgtttaccactgcttttaacgccacagttctaaaacctcacccatgtgaaaaataagctggttatttTcaggcaGCttgtggatatgtgatttattcacctTgggctgcacccttggtcaataaatcaggtatcccctcgatgccgaaaaatTAGCCTTACATGTATAGAAAATGATAACAAAGGAATAACATTGTTTTAGCCCTGAGGCCAAAAAGAAAAAAGAGGGTAACATTGTGCATGTCCTACACAACTACATAGGTAATGAGATCCAGGATAGTTGGTATAAGCATCACAAGGTGTCTTCATCGACTACTGTTTGGTTGGGAATGAATTTTGGAGACACTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O57382	Tolloid-like protein 2 OS=Xenopus laevis OX=8355 GN=tll2 PE=2 SV=1
O57460	Dorsal-ventral patterning tolloid-like protein 1 OS=Danio rerio OX=7955 GN=tll1 PE=2 SV=1
O60462	Neuropilin-2 OS=Homo sapiens OX=9606 GN=NRP2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008894 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR050633 all species →	Family	Neuropilin/Multicopper Oxidase/Coagulation Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46806 all species →	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0098978 all species →	Cellular Component	glutamatergic synapse	Interproscan
GO:0099055 all species →	Cellular Component	obsolete integral component of postsynaptic membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0402.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.