Gene detail

Detailed information of amic_s0405.g3.t1 in Acropora microphthalma

Genomic Location: sc0000405_pilon:30552...45455
NR annotation: XP_029207739.2, DDB1- and CUL4-associated factor 8-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0405.g3.t1

GTTTTGGTTTGGTGAAGGAGCAGAAAATTTATTAGCTTTTATTTGTTTACAAAGTCACTGTCGCAGCTAGAGGTTCCAATGACTGAGACAGAAGAAGGAAGCGCCAAGGAAGGAGATTTTTCTCGTATTTAAGTTTCGAGTAGGCGAAAGCAAAATTCTTCGGTGCCTTTAATTTCTCGAATCTGTGAAGTACATTTCATTTCTAACATGGAAAGAACAGCGAACCCTTTTGTTTCCAACTTGCAACATCGTCAGCTGGGCATCCTTTCGCCGATGAATTTCTCCAGACAAACTTCAGGTTCTTGTGGACTTGTCAAACGATTATCGCTCCATAACAAACTGGAGCACCATGAGGGATGTGTGAACACACTTCATTTCAACATGTCGGGAGATCTTTTGGCCTCTGGTAGCGACGATCTTGATATTGTAATATGGGATTGGGCTAAAGGCAAAAAGAAAATAGCATATGAAAGTGGTCACACAAGTAATGTTTTTCAGGCGAAGTTTATGCCTTACACAGACACCACGATAGTGAGCTGTGCCAGAGATGGGAAGGTGCGTGTGGGATTTCTTCATCCTTCCTCAGAAGAAGGCTGCAAGAGCACAAAATGTCTTGCTCAGCACAAAGGAGCTGCTCATAAGCTTTGTATACAGCCTGATTCAGCCTGTGAGTTTCTTACCTGTGGAGAAGATGGTGCAGTATTTCATGCTGATCTCAGGGACGACAAAGCACACAAGCTTTTTTCTTGCCGTGCTGAACACAAAAGAGTTCCTCTGTACACAATTTTTACCAACCCTCGAAATATCTATGAGTTTGCAGTTGGTGGGCGAGACCAGTTTGCAAGAGTGTATGATAGAAGAAAGTTACCAGAGGACAATAAAGCTGATGTTGAACCCATTAAAAAGTATTGTCCCCACCACCTGATGGAAGGAAGTGATGTCTATGCAAATATTACTTGTCTTGTTTACTCTTATAATGGAACAGAGCTACTTGTTAGTTACAACGATGAGAACATCTATCTGTTTGACTCATACTCAAGTTCAGAAGCTGAGTACGTCAAAACATACAAAGGCCACAGAAATAATGCCACTGTCAAGGGTGTCAACTTCTATGGCCCACAAAGTGAGTACATAGTAAGTGGAAGCGATTGTAGCCATATTTTCTTATGGGACAAACAGACGGAAGAGGTGGTTCAGTTTCTACAGGGAGACAACACTGGAGTGGTGAATTGTCTAGAGCCTCACCCACACGCTCCTGTTCTGGCAACCAGCGGCCTTGACCACGACATCAAGCTGTGGTTACCAACAGCAGAACAACCCACAGATTTGGATGGTCTGGAAAATGTGATCAGGGATAACGATCGAGATAGGGAAGAAGACAGGCAACGTCCTCACGACCCAATTAGCGAACACCTTCTGTGGCTGATGATGAACCACATCAGGAGACGTCAGTCGCGAAACGAGAATGGTGATCCAGACAGCGACGACAGTGACCTTACcgacgacgaagatgacgacaacgatgacgaggatggtgaATTCGGAAACCGAGTGCAGTGCAGTCCATCTTGAGATCAATGTTAAACCGACAAGAAACCACGTAGCAAGCTCCCTCACCTTAGTTCACCTTAGTTTTCATTAACTTATGGTTTTCATGCATTATGCATAGAGGTCAGGGCCATCACAAGTAGAAGCAGAGAAACCAATTTAATTTAGAGTTCTGCTAACAGCAGTGAGTAGGTAAATCCATTCCTTTTTGGAGAGATGTATGGACTTTGTAGTGTTAAATCTCAGCTAACAGCTATCTGCTTGGAACTGCTTCAAGATAAGGTTGACTGTGTCACCAGGCGTTTATTCAACCTTGAATCTCCCAAACGTTTACACTAGGATAGAATTGTTATTATAAAGACGGAAAGATGAATACATCATGGAAATGTTTTTGTTTTTTCTGAAGTACAGCTGCTTGATAAACATCCAACCAGGCTAATGAAATACTCTCTTTAGAAAAAGGGATAAAACGGAAAGAACGAGCTTGTATGGTTGACCGAGGGACAAATCTGTTTGGCATTATTGTCTTTCAGGATTTGTTTTGCAAAGGCGTTATTGCCATTGATATTTAATTTAAGTTTCTTTCTGAGGCACTGTTGTAGTTATCTCAGTAAGGGCCCATCTTGAAAACGTCTTTGAAATCATTCAAAAAAACATTTACCATTTTCTTGTGTTGAGCGAAATTTTTGCTCATCCCAGGGGAGGCTTCGtattattattattatcattattattattaGTAATAGTATTAAATTTTGCCTTTCTCCCTTCAAAATGTATTAATTAACTTTATAATGTGGCTAGGTCATTGTTTAACTTTGATTGAGAAAACTGTTTGGAGTTATGGAATGAAACGATAAAATTTGTACTGTAAATAGTGGTGTTTCTGTAAATGAAATTCAGTTTAAAACGTTTGTAGAATGAAGTAACTGCTGAAAACTGTTAGTATTAAGACATTAGTACAGTAGAATGACATTTGTTGTTATAAAACTTGTGTTAATAAAAATGTTGAGCATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRH1	DDB1- and CUL4-associated factor 8 OS=Xenopus laevis OX=8355 GN=dcaf8 PE=2 SV=1
Q28I90	DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis OX=8364 GN=dcaf8 PE=2 SV=1
Q5TAQ9	DDB1- and CUL4-associated factor 8 OS=Homo sapiens OX=9606 GN=DCAF8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003164 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR045151 all species →	Family	DDB1- and CUL4-associated factor 8-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15574 all species →	WD REPEAT DOMAIN-CONTAINING FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0405.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.