Gene detail

Detailed information of amic_s0414.g4.t1 in Acropora microphthalma

Genomic Location: sc0000414_pilon:125539...136655
NR annotation: XP_029180306.2, malectin-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0414.g4.t1

GGTAAATTCTTGTGGCCTCCACCCTTGCACAAGAACTGAAGAAGGTCGTTGGTGCATTGTTTGGTACCAGGCTTCCTGCTCTTCCCATGATTCTTTAATGGTGCCTCGAAACGGATTGTTCACCATGGATAGATTGTTCTTTGAAGTTTTTGTCACTCTTTTATTTGGAATATTCAATGGAGAGGTGTTCAGTACAGGAGAAGTTGTTTACGCTGTGAATAGTGGAGGACCGGCTCATACGGATTTGAACGGAGTTCACTTTCAAGCTGACAAGTTGACTATTGGAACTTCTTCAGATTTCGGGAAATCGTTATCGATCGGCAGAGTAGCGCCTGCTGATCAAATTTTATATCAAACGGAGCGCTATCACTTTTCAAACTTTGGCTACAATATCCCTATAAAAGAAAACGGTGACTATGTACTGATATTGAAGTTTTGCGAAGTTTATTTTCAAGGTCCAAGGCTTAAGGTTTTTGATGTAGCTGTCAATCAACATACAGTGATCAAGGGATTAGACATATATGAGAGAGTTGGCAGAGCTGTTGGACATGATGAATATATTCCATTTCGAGTCAATGACAATCAGTTATTGCTTGATGGAGAAACATTGCCATTTAGTGGCCTCATATATGTTGAATTCTTAAAGGGTTATTATGATAATCCAAAAATCAATGCTGTTTTGGTAATGAAAGGAACTTTGGAGGATGTTCCAAAACTTCCTCCACTGCCCCTCCCAGGGGAAGAAAATGTAGATGATGATGACGAAGACCAGTCAAAAGAAGATAGGCCCCAAAAACAACGCAAGATATCAGGACCCAAAACGCTCGACCCATACGCAAATGATGAATCTAGCATGTTAATTCCCATTGCTATAGCTATTGCAGTTTTCTTGCCTACACTCTTTTGTTTGTGTAAGCTGTAGTAGTAAATAATTATTCCCTGAATGTTAATGTTGGGTTTATTTATTTCATTGTAGGTTACAGTGTTTCATTTGAATggctctggcaaaaacgtcctaactgacattttgcattttttttcatttgggctcaaaagtggttgattttttgcatgtgacccaacactattaacaaaataagtgttctataatttttttggctggtttgttttttatttccaaaaattaacatatgcaataatgttgggtcacatgcaaaaagtcaccgacttttgagcacaaattaaaaaaaaccaaaatgtcagttaggatgtttttgcccagagcccttcaTTTGTGAAAAGAATCTCGTTTTTTACAGTCTTTTAATATTCTTGCCAATTACTGATCTCCATCATTATTGCAACATTTGGTAGTTTATTTAAGTCAGATAATAGTGACTTAAGTAATAGTAATAATATTACTATTACTTTTTATTATTGCTCAACTCACATGTTATCAAAATGGAATGTTCATCTTTTGTGCCTGTAATAAAAAAAAATGTGGATTCGATCATTTGAGTGTTTTATTTAGTTTACACTTTTCCTTTCAGTTTGGGAAAGTACAGGTGCTTTCATGGCCTCCTGATGTTGGCTGAGTGGTTGTTAAACAATTTGTAGTTATGTAATTTAAATTTCTAGCCAAAATTTTTGAGAACAAATATGCAACATACATTGAAATGTTTGTGAAATATTTCAAAATATTGCAAAAACATGGATAACTTTACAATAAATTTAAACCATGACAAAAATGCATTAAAATTATTGTAAAATTTGTAAAAATGGCCATATCAAATTATTAATAATGTACTTGTACACCAAACAATTATTATTGTAAGTTCCTTTTACAATAATAATGGTAATATACATAAAGGCCGACATGAGGTAAGGAAAATTATTGTTAAAAATCTTAACAAACATGCACAATCTGACATTTCCGTTGTAGTTCACTTTTGAAGAGATATATCCCCGCTAATATACATTACATGTGGCTCTGGCTTCCTCCTTTTGATCAAGTAATTGTTAATATAAGACATATAGTATCATGGCTTCTCTATAAATACTGAAGATTAATTATCAGCTTGGTATTGGGTCCCAGTATCAAAATTTATAAATAAACACTTTGAAATACAATAATTATAATTATTCTCATAATTTAAGGTAGTTCAGATGTTAAATATAAAATGAGCCAGTGGCCTTCATAcctggggaggggactcacatatgaaacagacggggatgctcgtcgtctcgcttagggtgtcccaggcaaagcactgatatttcaagccgccaaggtctcgcttagggttccgcgaaacacagaattacgcgaagagaaacagaagtcaaattttcttttttattctattttttctttttcaagcggtctctttttaatagccacacccagattggtctcctttaggggctaaatttgaaatttccaacgagcatccccgtctgttccatataggagccccccccccCCCTTCATAATGGGCCGTCAAATAGTTTGTTATTCTTGTTCATTTTCCAAACTAAACTCTGCTTGCAGCATATTAAGCAGCTTCCCTCTAAAATATAACCATTTGGTCAAACATAGAAATCTCTAACTGAAGTTCATTTCCATGAAAGTATGCTGTTTTTATGCACTCCATTGTATCAGAATAATACTTTGCTATTGTCATACACACAACAATAAACTGAATAGTTGTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5FVQ4	Malectin OS=Rattus norvegicus OX=10116 GN=Mlec PE=2 SV=1
Q14165	Malectin OS=Homo sapiens OX=9606 GN=MLEC PE=1 SV=1
Q6ZQI3	Malectin OS=Mus musculus OX=10090 GN=Mlec PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007173 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11721 all species →	Malectin	Malectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021720 all species →	Domain	Malectin domain	Interproscan
IPR039155 all species →	Family	Malectin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13460 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0414.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.