Gene detail

Detailed information of amic_s0416.g2.t1 in Acropora microphthalma

Genomic Location: sc0000416_pilon:3286...5950
NR annotation: XP_015758429.1, PREDICTED: uncharacterized protein LOC107337716 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0416.g2.t1

GTAATAACTTTGCAATATTCTCAGAGTGCTACTGAACCTCTTTCTGTCACTGATGGCATAAACGAATGACCTGTCAAAATCCGCAAATGTTCGACTTTGCATAGGACCCAAAATACCAGTCGATTTTTATTCGGCCACTTCTCGGAAGTTGCCTAGCAAATTCGCGAAGTCGGACGCTTGATGATGAACGCAGCAAACGAACACAGAAATCAAAAACGGTCATTAAAACAAAAAAGGGAAACTATTCGAGATTCAGTCAAAGCAACGATGCCTACTTCATCTGAAGTGCGGCGTTTCACTAGTGAAGGCAGGTATGGTGGTCGTCCTCTATCAAGACATGGCAAGCAACCATCAAGCAGCACATCCCTGGACAAGGACCAAACCGTAAGAGCCCATGAGATTGCAACAAGCTCCCAAAGAAAGCATCTTTTATATCAAAACCCAAAGCAAGGAGGAGCACACCATATTCATGGTCAAAGTTCTGATGAAGGTTTTTCTTCCGAGAAAGCTCACTTTGTTCCAAGGCCACCATCAGGACAACGAAAAGGTCGGCCCATATCAGCGAAGGGCAGACTGCGCCCTAGTTCTTTTTCAGGAAGTGAGAACATAGGGTCAAAAGAAAGTTCACCACAAATACCATTACGTCCTCCATTAAAATTGCAGTCGTCTTTCTCAAAATACTCACCACTTCCCGACATTGGCACAGGACCTCAACCAAATAGTGACAATAATCATGTCTCATGTGATTCCTTGGTGAAAGGACCTAATATGCCATCAAACAATAAAATGGACAATTCTGTTCACTTGTTGCAAACAACAGCTGGTCTGTCGACTCAACATACATCATTTACCCTCCCTAGTGAACCTTCAAAGGAAGAAACAGCAAGAATACATCTTGCTGTGAAACTTTTAAATGGATCTCGGCATGAAAGGTGGTTTAGGAACACTGATACGCTTGGGGCAGTGATGGCATTTGCTGCATCTTTAAGTACGGGAAAGCTTCCCCCTTGTCAGTTTTGCACCAATGAGGTTCCCAGAAGGGTCTTCGACAATTGCACTCTCAGTCTTTCTCAAGCAGGGATCCAATCCAGAACACTTCTTCATCTTGAAGAAAAACTTGATTAAATTCAATAATATTTATGTGTTAACAGTTTGTACAAACAGGGGCTTGAGCATAAACCCAAACAAACCCTCAACTGGATGTTAACAAGACCAGTGAGTAGGGATTATGCTTaaggtaaataccagttgctgtgtgttcattgaagtaatgataagtcctatcagacatggttaaaagtgctgaccacctaggaatatcatgttctcagtacttaatgggaaatcaaatgggttaatggctacctgcaatcacacctcccacctctatgatcattgtatgtggaagtgagtttcagttgatctcaatctgtcttaagggttttcttagtactctggttttcaaccctcGAAAAAAGGAATGGACATGCCACCTTGTGGTCAGCCTGGCTGAATTAGCTGGAAGGGATTCTGTATGAAAAAAAAAAACACAGAATCAAAATACAGCCAGTAGTGAGGTCATTATTTTGAAGTTGCCGTGGAAACTTGGCTCAAGTGGCTTTTTTTACTAAAAAGACGTTGTACTTTATAGTATCTTTTACGTTCTACACTAATTATGACTGGAAACTTCCTCACAAGGACTTGAAGCAGCTAAACTGAAGAATGGAAAAGTGGCAACGAGAAAAAACAACAGCAATAAACAGATGAACTTGTACACCTTGATGTCATAAAGGGAAAGAGTTGTCCCCAAATTTGAGTCCTGCCAAGGATAAAATGTGAACAAAATTTAAGTTCTTAATTCCTTGTTTGGCCCTATAATAATCCATTGAAGTGTTTAGATTACAAAGAAACCTTAGTGTTGCTTCAGTGGAGGGTGGGAACAAGTTCTTAATAATTTATTGTCATATTTCCACAATGAGACAATTATAAAGTTGATGTTTTAAGAATTAGCACTTCATCACAGCGAGTGATGAAGGCTGATGTTTTAAACACTGTTTTTATCAACTCATTTGAAAATTACACTCAAAATATTTAAATGAGTGGTGAGACTTCAATGACTGTGTGAATTTTGGACTTGTATTTTAACACAGTTATGTACTGTAGATAATATTGAATAAACTATTCATTAAATG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009133 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR050730 all species →	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322 all species →	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0416.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.